Factsheet for TraesCS1D01G034200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT1G80670.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT1G80670.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT1G80670.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT1G80670.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G041300.1	Wheat	plastid	99.71	99.71
TraesCS1A01G033000.1	Wheat	plastid	99.71	99.71
Os08t0176800-01	Rice	plastid	92.71	92.98
KXG24577	Sorghum	cytosol, plastid	89.21	85.24
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	83.97	82.29
HORVU1Hr1G004960.1	Barley	plastid	97.08	81.42
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	81.05	80.58
TraesCS3D01G224200.1	Wheat	plastid	80.76	80.29
CDY53220	Canola	plastid	79.88	79.19
CDY66129	Canola	plastid	79.88	79.19
Bra008447.1-P	Field mustard	plastid	79.88	79.19
KRH71020	Soybean	cytosol, plastid	79.59	78.67
KRH75181	Soybean	nucleus	79.59	78.67
Bra003577.1-P	Field mustard	cytosol	63.27	78.62
AT1G80670.1	Thale cress	cytosol, plastid	79.01	77.65
CDX67958	Canola	cytosol, plastid	77.84	77.17
Bra035162.1-P	Field mustard	plastid	78.13	77.01
CDY39955	Canola	plastid	78.13	77.01
CDX87331	Canola	plastid	78.13	77.01
Solyc10g047000.1.1	Tomato	nucleus	78.13	76.57
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	81.63	75.68
CDX79362	Canola	cytosol, plastid	73.76	75.3
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	80.76	74.86
AT1G15850.1	Thale cress	plastid	27.41	67.14
TraesCS4D01G245500.2	Wheat	cytosol, plastid	33.24	33.04
TraesCS2D01G193800.1	Wheat	cytosol	31.2	31.29
TraesCS5D01G406300.1	Wheat	mitochondrion	23.62	25.16

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1D01G034200
EnsemblPlants:TraesCS1D01G034200.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr1D:-:14480627..14486690

Molecular Weight (calculated)

38046.6 Da

IEP (calculated)

8.330

GRAVY (calculated)

-0.492

Length

343 amino acids

Sequence
(BLAST)

001: MATLTSLASN PNPNKSFEVL PNPGDSLSSL SFSPKSNLLV ATSWDNQVRC WEIGNGNSQP KASISHDQPV LCSAWKDDGT TVFSGGCDKQ VKMWPLLSGG
101: QAQTVAMHDA PVKEVAWISQ MNLLVSGSWD KTLRYWDTRQ PNPAHVQQLP DRCYALAVNY PLMIVGTADR NIVIFNLQNP QTEFKRIQSP LKYQTRCVAA
201: FPDQQGFLVG SIEGRVGVHH IDDSQQSKNF TFKCHREGND IFSVNSLNFH PVHHTFATAG SDGAFNFWDK DSKQRLKAFS RCPQPIPCSS FNNDGSIFAY
301: GVCYDWSRGA ENHNPANAKT SIYLHSPQEA EVKGKPRIAT GRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.