Factsheet for VIT_09s0002g09150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	92.75	91.43
KRH10504	Soybean	cytosol, plastid	86.96	86.46
KRH43922	Soybean	nucleus	86.96	86.46
Bra008447.1-P	Field mustard	plastid	83.48	83.24
Bra003577.1-P	Field mustard	cytosol	66.38	82.97
Os08t0176800-01	Rice	plastid	81.74	82.46
Solyc10g047000.1.1	Tomato	nucleus	83.19	82.0
AT1G80670.1	Thale cress	cytosol, plastid	82.61	81.66
TraesCS1D01G034200.1	Wheat	plastid	80.58	81.05
TraesCS1B01G041300.1	Wheat	plastid	80.58	81.05
Bra035162.1-P	Field mustard	plastid	81.74	81.03
TraesCS1A01G033000.1	Wheat	plastid	80.29	80.76
Os01t0635400-01	Rice	cytosol, plastid	75.94	76.16
KXG24577	Sorghum	cytosol, plastid	78.84	75.77
TraesCS3A01G226200.1	Wheat	plastid	75.65	75.65
TraesCS3B01G258300.1	Wheat	plastid	75.65	75.65
EES01141	Sorghum	plastid	75.36	75.58
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	80.58	75.14
TraesCS3D01G224200.1	Wheat	plastid	75.07	75.07
Zm00001d044116_P001	Maize	cytosol, plastid	75.07	75.07
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	80.29	74.86
CDX79657	Canola	cytosol	10.14	71.43
AT1G15850.1	Thale cress	plastid	28.12	69.29
HORVU1Hr1G004960.1	Barley	plastid	79.71	67.24
HORVU3Hr1G056400.2	Barley	cytosol, plastid	74.49	64.41
CDY72330	Canola	cytosol	17.68	61.0
VIT_03s0091g00710.t01	Wine grape	cytosol	33.04	33.83
VIT_01s0113g00430.t01	Wine grape	cytosol	24.35	25.69
VIT_00s0490g00010.t01	Wine grape	cytosol	0.29	5.26

Protein Annotations

EntrezGene:100250787	wikigene:100250787	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EMBL:AM430919	ProteinID:CAN60438
ProteinID:CAN60438.1	ProteinID:CBI36485	ProteinID:CBI36485.3	UniProt:D7TZH1	EMBL:FN596494	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006405	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0043130	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100250787	wikigene:LOC100250787
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015CC418	ArrayExpress:VIT_09s0002g09150	EnsemblPlantsGene:VIT_09s0002g09150	EnsemblPlants:VIT_09s0002g09150.t01
unigene:Vvi.15329	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002274315
RefSeq:XP_002274315.1	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:10807292..10834549

Molecular Weight (calculated)

38456.3 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.482

Length

345 amino acids

Sequence
(BLAST)

001: MSNFSAANPN PNKSIEVAQP PTDSVSSLKF SPKANFLVAT SWDNQVRCWE ITRDGATTGS VPKASISHDQ PVLCSAWKDD GTIVFSGGCD KQVKMWPLLS
101: GGQPVTVAMH DAPIKEVAWV PEMNLLVTGS WDKTIKYWDT RQSNPVHTQQ LPDRCYAFTV RHPLMVVGTA DRNLIVFNLQ NPQTEFKRIT SPLKYQTRCV
201: AAFPDQQGFL VGSIEGRVGV HHLDDAQQSK NFTFKCHREG NEIYSVNSLN FHPVHHTFAT AGSDGAFNFW DKDSKQRLKA MSRCSQPIPC SAFNNDGSIF
301: VYSVCYDWSK GAENHNPSTA KNHIFLHLPQ ESEVKGKPRV GTSRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.