Factsheet for VIT_03s0091g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_00s0670g00010.t01
VIT_01s0010g02430.t01
VIT_02s0109g00370.t01
VIT_03s0091g00710.t01
VIT_07s0130g00410.t01
VIT_08s0007g03940.t01
VIT_11s0065g00340.t01
VIT_12s0057g00240.t01
VIT_13s0019g00800.t01
VIT_13s0067g01530.t01
VIT_14s0083g00220.t01
VIT_14s0083g00610.t01
VIT_15s0021g02230.t01
VIT_16s0022g01820.t01
VIT_17s0000g08170.t01
VIT_18s0089g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19590.1	VIT_14s0083g00220.t01	AT1G67210.1	20706207
AT3G19590.1	VIT_11s0065g00340.t01	AT2G06990.1	20706207
AT3G19590.1	VIT_00s0211g00050.t01	AT2G22640.1	25262777
AT3G19590.1	VIT_13s0019g00800.t01	AT2G28740.1	20706207
AT3G19590.1	VIT_00s0670g00010.t01	AT3G11830.1	20706207
AT3G19590.1	VIT_03s0091g00710.t01	AT3G19590.1	25262777
AT3G19590.1	VIT_15s0021g02230.t01	AT3G20050.1	20706207
AT3G19590.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT3G19590.1	VIT_02s0109g00370.t01	AT4G10110.1	20706207
AT3G19590.1	VIT_18s0089g00220.t01	AT4G10110.1	20706207
AT3G19590.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT3G19590.1	VIT_08s0007g03940.t01	AT5G03740.1	20706207
AT3G19590.1	VIT_13s0067g01530.t01	AT5G05510.1	25262777
AT3G19590.1	VIT_14s0083g00610.t01	AT5G15980.1	20706207
AT3G19590.1	VIT_07s0130g00410.t01	AT5G26360.1	20706207
AT3G19590.1	VIT_17s0000g08170.t01	AT5G26360.1	20706207
AT3G19590.1	VIT_16s0022g01820.t01	AT5G51600.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107160.2.1	Tomato	nucleus	89.91	89.12
PGSC0003DMT400066160	Potato	extracellular	89.61	88.82
KRH35682	Soybean	nucleus	89.32	88.53
KRG91092	Soybean	nucleus	88.43	87.65
KRG91104	Soybean	nucleus	89.02	87.21
Bra038220.1-P	Field mustard	cytosol, plastid	84.57	83.82
CDX95434	Canola	cytosol, plastid	84.57	83.82
CDY42193	Canola	cytosol, plastid	84.57	83.82
AT1G49910.1	Thale cress	cytosol	83.98	83.48
CDY59371	Canola	cytosol, plastid	83.68	83.19
Bra014226.1-P	Field mustard	cytosol, plastid	83.09	82.6
EER87819	Sorghum	cytosol	83.68	82.22
AT3G19590.1	Thale cress	cytosol	82.49	81.76
CDY03579	Canola	cytosol, plastid	82.49	81.76
Os03t0448600-01	Rice	cytosol	83.09	81.63
TraesCS4A01G058600.1	Wheat	cytosol, plastid	82.79	80.87
TraesCS4D01G245500.2	Wheat	cytosol, plastid	82.49	80.58
TraesCS4B01G246100.1	Wheat	cytosol	68.25	74.92
HORVU4Hr1G067810.1	Barley	plastid	82.79	69.75
Os07t0588500-00	Rice	cytosol	70.62	65.38
TraesCS2A01G194000.1	Wheat	cytosol	64.69	63.01
TraesCS2D01G193800.1	Wheat	cytosol	63.8	62.87
TraesCS2B01G212800.1	Wheat	cytosol	63.8	61.96
VIT_01s0113g00430.t01	Wine grape	cytosol	36.2	37.31
GSMUA_Achr4P03390_001	Banana	extracellular	45.1	35.93
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	34.42	33.14
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	33.83	33.04
VIT_00s0490g00010.t01	Wine grape	cytosol	0.3	5.26

Protein Annotations

EntrezGene:100248006	wikigene:100248006	MapMan:13.3.5.5.2	Gene3D:2.130.10.10	ProteinID:CBI22464	ProteinID:CBI22464.3
UniProt:D7SXR4	EMBL:FN595242	GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007049
GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	GO:GO:0033597
GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100248006
wikigene:LOC100248006	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF24
SMART:SM00320	SUPFAM:SSF50978	TIGR:TC59011	UniParc:UPI00015CD111	ArrayExpress:VIT_03s0091g00710	EnsemblPlantsGene:VIT_03s0091g00710
EnsemblPlants:VIT_03s0091g00710.t01	unigene:Vvi.15003	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002264472	RefSeq:XP_002264472.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:7149908..7160638

Molecular Weight (calculated)

37508.1 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.423

Length

337 amino acids

Sequence
(BLAST)

001: MTAVNPPVIG RELVNPPADG ISNLRFSNHS DNLLVSSWDK SVRLYDASAN VLRGEFMHGG PVLDCCFHDD SSGFSASVDN SVRRLVFSHG KEDVLGRHDA
101: PVRCIEYSYA TGQVVTGSWD KTLKCWDPRG ASGQERTLVG TYAQPERVYS LSLFSNRLVV ATAGRHVNIY DLRNMSQPEQ RRESSLKYQT RCVRCYPNGT
201: GYALSSVEGR VAMEFFELSE ASQAKKYAFK CHRKSEAGRD IVYPVNAIAF HPIYGTFATG GCDGFVNVWD GNNKKRLYQY SKYPSSVAAL SFSRDGRLLA
301: VASSYTFEEG DKPHEPDAIF VRSVNEMEVK PKPKVLP

Best Arabidopsis Sequence Match ( AT1G49910.1 )
(BLAST)

001: MTLVPAIGRE LSNPPSDGIS NLRFSNNSDH LLVSSWDKSV RLYDANGDLM RGEFKHGGAV LDCCFHDDSS GFSVCADTKV RRIDFNAGKE DVLGTHEKPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV

Arabidopsis Description

BUB3.2BUB3.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7L6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.