Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G193800.1 | Wheat | cytosol | 94.52 | 95.91 |
| TraesCS2A01G194000.1 | Wheat | cytosol | 94.24 | 94.51 |
| Solyc01g107160.2.1 | Tomato | nucleus | 62.54 | 63.82 |
| VIT_03s0091g00710.t01 | Wine grape | cytosol | 61.96 | 63.8 |
| PGSC0003DMT400066160 | Potato | extracellular | 62.25 | 63.53 |
| Bra014226.1-P | Field mustard | cytosol, plastid | 61.96 | 63.42 |
| CDY59371 | Canola | cytosol, plastid | 61.96 | 63.42 |
| Os07t0588500-00 | Rice | cytosol | 65.42 | 62.36 |
| Bra038220.1-P | Field mustard | cytosol, plastid | 61.1 | 62.35 |
| CDX95434 | Canola | cytosol, plastid | 61.1 | 62.35 |
| CDY42193 | Canola | cytosol, plastid | 61.1 | 62.35 |
| KRH35682 | Soybean | nucleus | 61.1 | 62.35 |
| AT3G19590.1 | Thale cress | cytosol | 60.81 | 62.06 |
| KRG91092 | Soybean | nucleus | 60.81 | 62.06 |
| AT1G49910.1 | Thale cress | cytosol | 60.52 | 61.95 |
| CDY03579 | Canola | cytosol, plastid | 60.52 | 61.76 |
| KRG91104 | Soybean | nucleus | 61.1 | 61.63 |
| TraesCS4B01G246100.1 | Wheat | cytosol | 53.31 | 60.26 |
| KRH35672 | Soybean | cytosol | 18.73 | 49.62 |
| TraesCS3B01G258300.1 | Wheat | plastid | 31.41 | 31.59 |
| TraesCS5B01G401600.1 | Wheat | mitochondrion | 29.11 | 31.37 |
| TraesCS1B01G041300.1 | Wheat | plastid | 30.55 | 30.9 |
| GSMUA_Achr4P03390_001 | Banana | extracellular | 35.73 | 29.31 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G212800.1 | EnsemblPlantsGene:TraesCS2B01G212800 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR10971 | PANTHER:PTHR10971:SF24 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 |
| SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | MapMan:13.3.5.5.2 | : | : |
Description
No Description!
Coordinates
chr2B:+:197233735..197238245
Molecular Weight (calculated)
38501.1 Da
IEP (calculated)
8.702
GRAVY (calculated)
-0.542
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPATGQPP VDAGGGRIGL GRELGHPPRD GVSNLRFSKH SNRLLVSSWE KAVRLLDVDA ATDALVGAFP HKRPVLDCCF HDNDSSAFSA SSDHVVRRLS
101: FSSKTSYRLG THDGPVRCVE YSDTTGQVIT GSWDRTIKCW DQRGATGPQY TLIGTHTQPE RVYALSLAGH KLVVATAGEH VNVYDLRNMS EPQQRKSFLN
201: SQTRCVECYP NKTGFALGTT DGRVAMDFFD QSESSLEKRY RFKCHRLTED RGRVAYPVNA IAFHSEHGTF ATGGCDGFVY TWDGEKKKRL FQSPKYPTSI
301: AALSFSKDNN LLAVASSYTY ERGKVENEPA TKIFIRDVNE VEVKPRH
101: FSSKTSYRLG THDGPVRCVE YSDTTGQVIT GSWDRTIKCW DQRGATGPQY TLIGTHTQPE RVYALSLAGH KLVVATAGEH VNVYDLRNMS EPQQRKSFLN
201: SQTRCVECYP NKTGFALGTT DGRVAMDFFD QSESSLEKRY RFKCHRLTED RGRVAYPVNA IAFHSEHGTF ATGGCDGFVY TWDGEKKKRL FQSPKYPTSI
301: AALSFSKDNN LLAVASSYTY ERGKVENEPA TKIFIRDVNE VEVKPRH
001: MTLVPAIGRE LSNPPSDGIS NLRFSNNSDH LLVSSWDKSV RLYDANGDLM RGEFKHGGAV LDCCFHDDSS GFSVCADTKV RRIDFNAGKE DVLGTHEKPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV
Arabidopsis Description
BUB3.2BUB3.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7L6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.