Factsheet for TraesCS4A01G000900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G076800.1
TraesCS4B01G232900.1
TraesCS4D01G234100.1
TraesCS5A01G298000.1
TraesCS5B01G297000.2
TraesCS5D01G304800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38600.1	TraesCS4A01G076800.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4B01G232900.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS4D01G234100.1	AT2G32840.1	21798944
AT5G38600.1	TraesCS5A01G298000.1	AT2G43370.1	21798944
AT5G38600.1	TraesCS5B01G297000.2	AT2G43370.1	21798944
AT5G38600.1	TraesCS5D01G304800.1	AT2G43370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G000900.2	Wheat	nucleus	72.77	73.66
HORVU4Hr1G000670.1	Barley	nucleus	66.78	67.01
TraesCS4B01G002400.2	Wheat	nucleus	62.5	65.41
Os06t0495700-00	Rice	nucleus	48.97	58.85
EES05262	Sorghum	nucleus	49.66	55.88
Zm00001d050793_P001	Maize	nucleus	49.83	53.59
GSMUA_Achr5P23660_001	Banana	nucleus	36.13	45.09
AT1G67210.1	Thale cress	nucleus	28.6	41.23
CDY12628	Canola	nucleus	29.11	38.99
Bra034014.1-P	Field mustard	nucleus	28.77	38.18
CDY46038	Canola	nucleus	28.6	37.78
CDX67412	Canola	nucleus	29.11	35.12
Bra028416.1-P	Field mustard	nucleus	25.34	34.5
Solyc03g045060.2.1	Tomato	nucleus	31.16	34.34
AT5G38600.1	Thale cress	nucleus	31.16	34.21
VIT_01s0011g02770.t01	Wine grape	nucleus	22.77	34.02
CDY49079	Canola	nucleus	30.48	33.78
KRH18266	Soybean	nucleus	29.79	33.66
KRG93782	Soybean	nucleus	29.45	33.14
VIT_14s0083g00220.t01	Wine grape	nucleus	33.56	31.16
PGSC0003DMT400008672	Potato	nucleus	9.08	29.94
KRG93822	Soybean	nucleus	23.8	25.65

Protein Annotations

EnsemblPlants:TraesCS4A01G000900.1	EnsemblPlantsGene:TraesCS4A01G000900	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR001878	InterPro:PSP_pro-rich	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	ncoils:Coil
PANTHER:PTHR13316	PANTHER:PTHR13316:SF0	PFAM:PF04046	PFscan:PS50158	SEG:seg	SMART:SM00581
SUPFAM:SSF57756	MapMan:16.8.1.2.3.3	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:745079..749992

Molecular Weight (calculated)

64333.3 Da

IEP (calculated)

4.823

GRAVY (calculated)

-1.054

Length

584 amino acids

Sequence
(BLAST)

001: MDEFISLGDE PQPRASEDLH QPLQVDAVDL NLNLNHAPPQ SEPEPEPLPS QHHPQGTKAS TSSVVVEVID LEEGQIACQQ SSSSAAAAAA QDAAADNPQA
101: KAKEEALGAN GVGPPPPPSH QQPQDDDIID LEEGQVEDMD LSDDNALVIV TKQHACVSAA ETPMGNNDGP PLSSRPSSGA FIDQSPTRGV KRPRTESAEP
201: SVRVVYNNLT RESKRKLVEL MQQWSEWQAR KQHALTETVE EVLDCGEETY YPALHVGSER SCAVSFWVDS QARGNAAVDD GAVPLYDREF TLGSTPMGDS
301: SNAEGKKDKD DSRCFNCGSY SHALKDCPKP RDHVAISNAR KQHNLKRNLS NVGNRGQNRY YQKTPGKFDD LKAGVLGSET RECLGLREND PPPWLHRMRE
401: LGYPPGYLDE VEDEDKPSGI TIFGDGEVKE EQQHEEGELP EKGEPSPPRK RMTVEFPGIN APVPENGDPW LWGSAPPPPL QSSSGRHQHS SSDSRDRAPP
501: APPGVEHYSS SRYHSYDYGP AIPGAGRRSS SGYDDGAWTP SPAFSSRQHS GSGSGSRERE RERERERERE RERERDRHYY SNRR

Best Arabidopsis Sequence Match ( AT1G67210.1 )
(BLAST)

001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL

Arabidopsis Description

At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.