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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • nucleus 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, secretory
BaCelLo:secretory
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH18266 Soybean nucleus 42.13 51.26
KRG93782 Soybean nucleus 40.7 49.33
AT1G67210.1 Thale cress nucleus 31.0 48.15
PGSC0003DMT400008672 Potato nucleus 13.51 48.02
Solyc03g045060.2.1 Tomato nucleus 40.22 47.74
GSMUA_Achr5P23660_001 Banana nucleus 35.45 47.65
Bra034014.1-P Field mustard nucleus 33.23 47.5
CDY12628 Canola nucleus 32.91 47.48
VIT_01s0011g02770.t01 Wine grape nucleus 28.46 45.78
CDY46038 Canola nucleus 31.96 45.48
CDX67412 Canola nucleus 33.86 44.01
Os06t0495700-00 Rice nucleus 33.39 43.21
Bra028416.1-P Field mustard nucleus 29.41 43.12
CDY49079 Canola nucleus 34.98 41.75
EES05262 Sorghum nucleus 34.18 41.43
AT5G38600.1 Thale cress nucleus 34.66 40.98
Zm00001d050793_P001 Maize nucleus 34.02 39.41
TraesCS4B01G002400.2 Wheat nucleus 32.11 36.2
KRG93822 Soybean nucleus 31.16 36.16
TraesCS4D01G000900.2 Wheat nucleus 31.8 34.66
TraesCS4A01G000900.1 Wheat nucleus 31.16 33.56
HORVU4Hr1G000670.1 Barley nucleus 31.0 33.51
Protein Annotations
EntrezGene:100247996wikigene:100247996MapMan:16.8.1.2.3.3ProteinID:CCB44046ProteinID:CCB44046.1UniProt:F6GVR1
EMBL:FN594955GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0008270InterPro:IPR001878
EntrezGene:LOC100247996wikigene:LOC100247996PFAM:PF04046PFscan:PS50158InterPro:PSP_pro-richPANTHER:PTHR13316
PANTHER:PTHR13316:SF0SMART:SM00343SMART:SM00581SUPFAM:SSF57756UniParc:UPI0002108672ArrayExpress:VIT_14s0083g00220
EnsemblPlantsGene:VIT_14s0083g00220EnsemblPlants:VIT_14s0083g00220.t01RefSeq:XP_002279557RefSeq:XP_002279557.2InterPro:Znf_CCHCInterPro:Znf_CCHC_sf
SEG:seg:::::
Description
No Description!
Coordinates
chr14:-:22255128..22267827
Molecular Weight (calculated)
70647.5 Da
IEP (calculated)
5.355
GRAVY (calculated)
-0.929
Length
629 amino acids
Sequence
(BLAST)
001: MPWLNSLVSR NVRDVIFVVL LPQKLLLDSD MGTEELINPP APSGSVCGSE DNELHNSNPE PGEADSSSSN SEVKEDKLNI ESLMQNKVDF EKVDSRLTPG
101: VVLDKDLVDK QLTSQGSVEV TETIVVTKLI NSSSSGVPTE NGCLTAPDEG PIGNHMIDGT SISGVKRARL TIDEQQPSVH VIYNSLTRDS KRKLEELLQQ
201: WSEWHAKYVS SSHDPKGQLD SGEKTYFPAL HVGLNKSSAV SFWVDNQTRK QQDKEFISLD GDSVPLYDRG FALGLVSEDG QSKPEGALEI IDASRCFNCG
301: SYNHSMKECP KPRDNVAVNN ARKQHKSRRN QNPGSRNPTR YYQNSPGGRY DGLRPGALGV ETRELLGLGE LDPPPWLNRM REMGYPPGYL DPEEEEQPSG
401: ITIYADEEVK DEQEDGEILE TEYLEPQRKM SVEFPGINAP IPKNADERRW AAGSRPHRRL NHSYEPSSRR NSHEQRWSRD YRDDGPCDSD MEISPPRSSY
501: PPRHGGIDSS YTSYSTRGNI PRPRSPNFGR SLSDRGGRSS LVHEDSLGYN SYSSLSYSSS SSRLSPHNYG SASYENNIDD RWNGSSSWSN KDRHRHDEHR
601: YHKGVYVQKL DMYIDEIRLV GERCTLLVQ
Best Arabidopsis Sequence Match ( AT5G38600.1 )
(BLAST)
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.