Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_05s0102g00080.t01 | |
VIT_13s0156g00270.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G38600.1 | VIT_13s0156g00270.t01 | AT2G32840.1 | 21798944 |
AT5G38600.1 | VIT_05s0102g00080.t01 | AT2G43370.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH18266 | Soybean | nucleus | 42.13 | 51.26 |
KRG93782 | Soybean | nucleus | 40.7 | 49.33 |
AT1G67210.1 | Thale cress | nucleus | 31.0 | 48.15 |
PGSC0003DMT400008672 | Potato | nucleus | 13.51 | 48.02 |
Solyc03g045060.2.1 | Tomato | nucleus | 40.22 | 47.74 |
GSMUA_Achr5P23660_001 | Banana | nucleus | 35.45 | 47.65 |
Bra034014.1-P | Field mustard | nucleus | 33.23 | 47.5 |
CDY12628 | Canola | nucleus | 32.91 | 47.48 |
VIT_01s0011g02770.t01 | Wine grape | nucleus | 28.46 | 45.78 |
CDY46038 | Canola | nucleus | 31.96 | 45.48 |
CDX67412 | Canola | nucleus | 33.86 | 44.01 |
Os06t0495700-00 | Rice | nucleus | 33.39 | 43.21 |
Bra028416.1-P | Field mustard | nucleus | 29.41 | 43.12 |
CDY49079 | Canola | nucleus | 34.98 | 41.75 |
EES05262 | Sorghum | nucleus | 34.18 | 41.43 |
AT5G38600.1 | Thale cress | nucleus | 34.66 | 40.98 |
Zm00001d050793_P001 | Maize | nucleus | 34.02 | 39.41 |
TraesCS4B01G002400.2 | Wheat | nucleus | 32.11 | 36.2 |
KRG93822 | Soybean | nucleus | 31.16 | 36.16 |
TraesCS4D01G000900.2 | Wheat | nucleus | 31.8 | 34.66 |
TraesCS4A01G000900.1 | Wheat | nucleus | 31.16 | 33.56 |
HORVU4Hr1G000670.1 | Barley | nucleus | 31.0 | 33.51 |
Protein Annotations
EntrezGene:100247996 | wikigene:100247996 | MapMan:16.8.1.2.3.3 | ProteinID:CCB44046 | ProteinID:CCB44046.1 | UniProt:F6GVR1 |
EMBL:FN594955 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR001878 |
EntrezGene:LOC100247996 | wikigene:LOC100247996 | PFAM:PF04046 | PFscan:PS50158 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 |
PANTHER:PTHR13316:SF0 | SMART:SM00343 | SMART:SM00581 | SUPFAM:SSF57756 | UniParc:UPI0002108672 | ArrayExpress:VIT_14s0083g00220 |
EnsemblPlantsGene:VIT_14s0083g00220 | EnsemblPlants:VIT_14s0083g00220.t01 | RefSeq:XP_002279557 | RefSeq:XP_002279557.2 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:-:22255128..22267827
Molecular Weight (calculated)
70647.5 Da
IEP (calculated)
5.355
GRAVY (calculated)
-0.929
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MPWLNSLVSR NVRDVIFVVL LPQKLLLDSD MGTEELINPP APSGSVCGSE DNELHNSNPE PGEADSSSSN SEVKEDKLNI ESLMQNKVDF EKVDSRLTPG
101: VVLDKDLVDK QLTSQGSVEV TETIVVTKLI NSSSSGVPTE NGCLTAPDEG PIGNHMIDGT SISGVKRARL TIDEQQPSVH VIYNSLTRDS KRKLEELLQQ
201: WSEWHAKYVS SSHDPKGQLD SGEKTYFPAL HVGLNKSSAV SFWVDNQTRK QQDKEFISLD GDSVPLYDRG FALGLVSEDG QSKPEGALEI IDASRCFNCG
301: SYNHSMKECP KPRDNVAVNN ARKQHKSRRN QNPGSRNPTR YYQNSPGGRY DGLRPGALGV ETRELLGLGE LDPPPWLNRM REMGYPPGYL DPEEEEQPSG
401: ITIYADEEVK DEQEDGEILE TEYLEPQRKM SVEFPGINAP IPKNADERRW AAGSRPHRRL NHSYEPSSRR NSHEQRWSRD YRDDGPCDSD MEISPPRSSY
501: PPRHGGIDSS YTSYSTRGNI PRPRSPNFGR SLSDRGGRSS LVHEDSLGYN SYSSLSYSSS SSRLSPHNYG SASYENNIDD RWNGSSSWSN KDRHRHDEHR
601: YHKGVYVQKL DMYIDEIRLV GERCTLLVQ
101: VVLDKDLVDK QLTSQGSVEV TETIVVTKLI NSSSSGVPTE NGCLTAPDEG PIGNHMIDGT SISGVKRARL TIDEQQPSVH VIYNSLTRDS KRKLEELLQQ
201: WSEWHAKYVS SSHDPKGQLD SGEKTYFPAL HVGLNKSSAV SFWVDNQTRK QQDKEFISLD GDSVPLYDRG FALGLVSEDG QSKPEGALEI IDASRCFNCG
301: SYNHSMKECP KPRDNVAVNN ARKQHKSRRN QNPGSRNPTR YYQNSPGGRY DGLRPGALGV ETRELLGLGE LDPPPWLNRM REMGYPPGYL DPEEEEQPSG
401: ITIYADEEVK DEQEDGEILE TEYLEPQRKM SVEFPGINAP IPKNADERRW AAGSRPHRRL NHSYEPSSRR NSHEQRWSRD YRDDGPCDSD MEISPPRSSY
501: PPRHGGIDSS YTSYSTRGNI PRPRSPNFGR SLSDRGGRSS LVHEDSLGYN SYSSLSYSSS SSRLSPHNYG SASYENNIDD RWNGSSSWSN KDRHRHDEHR
601: YHKGVYVQKL DMYIDEIRLV GERCTLLVQ
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.