Factsheet for VIT_05s0102g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_03s0038g00350.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_10s0042g00400.t01
VIT_12s0142g00110.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_15s0046g00060.t01
VIT_16s0098g00600.t01
VIT_16s0098g01660.t01
VIT_17s0000g07350.t01
VIT_19s0014g02940.t01
VIT_19s0014g02960.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43370.1	VIT_07s0005g00320.t01	AT1G02840.1	15987817
AT2G43370.1	VIT_01s0026g00250.t01	AT1G23860.1	15987817
AT2G43370.1	VIT_10s0042g00400.t01	AT2G24590.1	21798944
AT2G43370.1	VIT_08s0040g02860.t01	AT2G37340.1	15987817
AT2G43370.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G43370.1	VIT_13s0019g01060.t01	AT3G55460.1	15987817
AT2G43370.1	VIT_15s0046g00060.t01	AT3G61860.1	15987817
AT2G43370.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944
AT2G43370.1	VIT_14s0030g00480.t01	AT5G18810.1	15987817
AT2G43370.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT2G43370.1	VIT_16s0098g01660.t01	AT5G53060.1	21798944
AT2G43370.1	VIT_19s0014g02940.t01	AT5G53800.1	21798944
AT2G43370.1	VIT_19s0014g02960.t01	AT5G53800.1	21798944
AT2G43370.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944
AT2G43370.1	VIT_12s0142g00110.t01	AT5G64200.2	15987817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09080_001	Banana	nucleus	56.18	69.2
CDX83484	Canola	nucleus	56.76	59.94
CDY22251	Canola	cytosol	27.06	59.74
CDY44222	Canola	nucleus	54.71	58.31
Bra000304.1-P	Field mustard	nucleus	54.71	57.94
KRH46935	Soybean	nucleus	54.71	56.88
KRH01744	Soybean	nucleus	57.35	56.2
CDY14697	Canola	cytosol, mitochondrion	29.71	55.8
Solyc09g098390.2.1	Tomato	nucleus	56.47	54.08
AT2G43370.1	Thale cress	nucleus	52.65	53.75
PGSC0003DMT400055636	Potato	nucleus	55.59	53.69
CDY23361	Canola	endoplasmic reticulum	38.82	51.76
Os09t0513700-01	Rice	nucleus	54.71	49.6
TraesCS5D01G304800.1	Wheat	nucleus	55.59	45.11
TraesCS5A01G298000.1	Wheat	nucleus	57.94	44.27
EER97037	Sorghum	nucleus	53.53	41.65
TraesCS5B01G297000.2	Wheat	nucleus	55.0	39.79
HORVU5Hr1G078170.27	Barley	nucleus	51.47	37.88
Zm00001d021137_P002	Maize	nucleus	40.59	28.22
VIT_04s0023g01580.t01	Wine grape	nucleus	24.12	23.03

Protein Annotations

EntrezGene:100261074	wikigene:100261074	MapMan:16.4.4.1.1	Gene3D:3.30.70.330	ProteinID:CBI36639	ProteinID:CBI36639.3
UniProt:D7U1M3	EMBL:FN596500	GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005689	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0017069	GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100261074	wikigene:LOC100261074
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF6	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00015CD379	ArrayExpress:VIT_05s0102g00080	EnsemblPlantsGene:VIT_05s0102g00080
EnsemblPlants:VIT_05s0102g00080.t01	unigene:Vvi.8607	RefSeq:XP_002263044	RefSeq:XP_002263044.1	SEG:seg	InterPro:snRNP35_RRM

Description

No Description!

Coordinates

chr5:-:21896852..21908866

Molecular Weight (calculated)

39304.8 Da

IEP (calculated)

9.383

GRAVY (calculated)

-1.123

Length

340 amino acids

Sequence
(BLAST)

001: MSGSRANAVF YAESYHPIQA GSIDGTDTLP HDNAVYRALL CSSAGLYDPF GDPKVIGDPY CTVFVGHLNH LTTEDTLHKA MSKFGRVKSL RLVRHIVTGA
101: SQGYAFVEYE TEREMRRAYE DAHHSMIDDC EIIVDYNRQQ LMPGWIPRRL GGGIGGKKES GQLRFGGRER PFRAPLRPIP LDDLKRLGIP PPPEGRYMSR
201: FQVPPPPRRK RSNMDREEPS HRGSSIDRED RYHKGGSIEG EEHSHEGSSV DREEHSHRRS SIDKRSSIDR EERFHKRSSS DREVRSHKRS STDLVERSDK
301: RSFIHGEERF HSRSSMDWEE HSHKSSMDRE RHSHKRHRQY

Best Arabidopsis Sequence Match ( AT2G43370.1 )
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD

Arabidopsis Description

SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.