Factsheet for VIT_01s0026g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g01580.t01
VIT_05s0102g00080.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_10s0042g00400.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23860.1	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT1G23860.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT1G23860.1	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT1G23860.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT1G23860.1	VIT_04s0023g01580.t01	AT3G50670.1	10593939
AT1G23860.1	VIT_04s0023g01580.t01	AT3G50670.1	9761791
AT1G23860.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT1G23860.1	VIT_10s0042g00400.t01	AT4G31580.1	18674533
AT1G23860.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g00800.t01	Wine grape	nucleus	72.22	79.01
KRG99320	Soybean	nucleus	70.2	78.53
CDY59084	Canola	nucleus	50.51	76.92
KRH45698	Soybean	nucleus	71.72	76.34
CDY47646	Canola	nucleus	61.11	65.41
GSMUA_Achr1P09660_001	Banana	nucleus	70.2	62.61
AT1G23860.1	Thale cress	nucleus	59.09	62.57
GSMUA_AchrUn_...	Banana	nucleus	64.65	59.26
Bra024624.1-P	Field mustard	nucleus	61.11	56.28
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.09	46.15

Protein Annotations

EntrezGene:100251981	wikigene:100251981	MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	ProteinID:CCB56658
ProteinID:CCB56658.1	UniProt:F6HPN0	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EntrezGene:LOC100251981
wikigene:LOC100251981	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0002108B40	ArrayExpress:VIT_01s0026g00250	EnsemblPlantsGene:VIT_01s0026g00250	EnsemblPlants:VIT_01s0026g00250.t01
RefSeq:XP_002264105	RefSeq:XP_002264105.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:8907448..8916688

Molecular Weight (calculated)

22002.7 Da

IEP (calculated)

11.461

GRAVY (calculated)

-1.056

Length

198 amino acids

Sequence
(BLAST)

001: MSRVYVGNLD PRVSERELED EFRVYGVIRS VWVARRPPGY AFVEFADRRD AVDAIRGLDG KSGWRVELSH NSKGGGGGGG GGGGRDRGRG GGEDLKCYEC
101: GEPGHFAREC RLRIGSRGMG SGRRRSISPR PRRSPSYGRR SYSPHARKSP RRRSVSPRRG RSYSRSPPYR RARNDSPFAN GYVMETDVGV AESNAGWH

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.