Factsheet for Bra024624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra012098.1-P
Bra014741.1-P
Bra023114.1-P
Bra023994.1-P
Bra030819.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23860.1	Bra030819.1-P	AT1G53720.1	16497658
AT1G23860.1	Bra023114.1-P	AT2G37340.1	18674533
AT1G23860.1	Bra000304.1-P	AT2G43370.1	15987817
AT1G23860.1	Bra039394.1-P	AT3G13570.1	18674533
AT1G23860.1	Bra012098.1-P	AT3G50670.1	10593939
AT1G23860.1	Bra012098.1-P	AT3G50670.1	9761791
AT1G23860.1	Bra014741.1-P	AT3G55460.1	18674533
AT1G23860.1	Bra023994.1-P	AT4G31580.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59084	Canola	nucleus	60.47	100.0
CDY47646	Canola	nucleus	85.58	99.46
AT1G23860.1	Thale cress	nucleus	76.74	88.24
KRH45698	Soybean	nucleus	63.72	73.66
KRG99320	Soybean	nucleus	60.47	73.45
Bra023994.1-P	Field mustard	nucleus	57.21	61.81
VIT_01s0026g00250.t01	Wine grape	nucleus	56.28	61.11
Bra032082.1-P	Field mustard	nucleus	55.81	59.11
GSMUA_AchrUn_...	Banana	nucleus	59.07	58.8
GSMUA_Achr1P09660_001	Banana	nucleus	58.6	56.76

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra024624	EnsemblPlants:Bra024624.1	EnsemblPlants:Bra024624.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008270	GO:GO:0016607	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M4E769	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF23	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00025421A6	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

AT1G23860 (E=6e-045) SRZ-21, SRZ21 | RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding

Coordinates

chrA09:+:23949879..23951259

Molecular Weight (calculated)

24671.2 Da

IEP (calculated)

11.433

GRAVY (calculated)

-1.119

Length

215 amino acids

Sequence
(BLAST)

001: MTRVYVGNLD PRVTERELED EFRIFGVLRN VWVARRPPGY AFLEFDDERD ALDAIRALDG KNGWRVELSH KDKGGRGGGG RRGGIEDSKC YECGEPGHFA
101: RECRRGRGGY GRRRSPSPRR RSPDYGYGRR SISPRGRRSP PRRRSVSPPP PRRYSRSPPP YRSSRRDSPR RRDSPYGRRS PYANGLRLVT VGHNWGCLLL
201: EQLNCCNITS SIKIL

Best Arabidopsis Sequence Match ( AT1G23860.2 )
(BLAST)

001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV

Arabidopsis Description

RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.