Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99320 | Soybean | nucleus | 88.71 | 93.22 |
| CDY59084 | Canola | nucleus | 56.99 | 81.54 |
| KRH04931 | Soybean | nucleus | 71.51 | 74.72 |
| KRH16160 | Soybean | endoplasmic reticulum | 71.51 | 74.72 |
| CDY47646 | Canola | nucleus | 71.51 | 71.89 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 76.34 | 71.72 |
| AT1G23860.1 | Thale cress | nucleus | 67.74 | 67.38 |
| Bra024624.1-P | Field mustard | nucleus | 73.66 | 63.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 70.43 | 60.65 |
| GSMUA_Achr1P09660_001 | Banana | nucleus | 71.51 | 59.91 |
Protein Annotations
| EntrezGene:100813882 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EMBL:ACUP02005276 | EnsemblPlantsGene:GLYMA_08G288300 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | UniProt:I1KXH3 |
| InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | EnsemblPlants:KRH45698 | ProteinID:KRH45698 | ProteinID:KRH45698.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 |
| SUPFAM:SSF57756 | UniParc:UPI00023CB0F8 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:-:40045250..40046907
Molecular Weight (calculated)
21368.0 Da
IEP (calculated)
10.934
GRAVY (calculated)
-1.106
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVSERDLED EFRIYGVLRS VWVARRPPGY AFIEFDDRRD ALDAIQALDG KNGWRVELSH NSKGGGRGGR GRGGEDTKCY ECGEPGHFAR
101: ECRLRIGSRG LGSGRRRSPS PYRRRRSPSY GYDRSSYSPR GRRSPRRRSI SPPWGRNYSR SPPYRPRRDS PYANAYVYVQ LSCSLL
101: ECRLRIGSRG LGSGRRRSPS PYRRRRSPSY GYDRSSYSPR GRRSPRRRSI SPPWGRNYSR SPPYRPRRDS PYANAYVYVQ LSCSLL
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.