CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93223
KRG96443
KRG99320
KRH01744
KRH02172
KRH04931
KRH13056
KRH15102
KRH16160
KRH28659
KRH38014
KRH42160
KRH45698
KRH46935
KRH50944
KRH58277
KRH68188
KRH69931
KRH73034
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	KRG96443	AT1G02840.1	18674533
AT2G37340.1	KRH68188	AT1G02840.1	18674533
AT2G37340.1	KRG99320	AT1G23860.1	18674533
AT2G37340.1	KRH45698	AT1G23860.1	18674533
AT2G37340.1	KRG93223	AT1G53720.1	16497658
AT2G37340.1	KRH13056	AT1G53720.1	16497658
AT2G37340.1	KRH01744	AT2G43370.1	15987817
AT2G37340.1	KRH46935	AT2G43370.1	15987817
AT2G37340.1	KRH38014	AT3G13570.1	18674533
AT2G37340.1	KRH28659	AT3G50670.1	18674533
AT2G37340.1	KRH69931	AT3G50670.1	18674533
AT2G37340.1	KRH76798	AT3G50670.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	18674533
AT2G37340.1	KRH73034	AT3G55460.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	21798944
AT2G37340.1	KRH73034	AT3G55460.1	21798944
AT2G37340.1	KRH04931	AT4G31580.1	18674533
AT2G37340.1	KRH16160	AT4G31580.1	18674533
AT2G37340.1	KRH02172	AT5G18810.1	18674533
AT2G37340.1	KRH50944	AT5G18810.1	18674533
AT2G37340.1	KRH42160	AT5G64200.2	18674533
AT2G37340.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67596	Soybean	nucleus	91.92	91.3
KRH67593	Soybean	endoplasmic reticulum	79.8	82.58
KRG95876	Soybean	nucleus	79.12	81.88
KRH42195	Soybean	endoplasmic reticulum	62.29	67.27
CDX73550	Canola	nucleus	62.63	65.49
CDX78183	Canola	nucleus	62.29	65.37
AT3G53500.2	Thale cress	mitochondrion, nucleus	62.29	65.14
VIT_08s0040g02860.t01	Wine grape	nucleus	57.91	64.66
KRH58317	Soybean	nucleus	47.47	64.38
CDY07586	Canola	mitochondrion, nucleus	61.28	63.19
CDX79732	Canola	nucleus	61.95	62.8
CDY52755	Canola	mitochondrion, nucleus	61.28	62.54
Bra003139.1-P	Field mustard	mitochondrion, nucleus	61.28	62.54
AT2G37340.1	Thale cress	nucleus	60.94	62.41
Bra007004.1-P	Field mustard	nucleus	62.29	62.29
CDX80835	Canola	nucleus	54.55	61.13
KXG21152	Sorghum	nucleus	63.64	60.58
CDY11223	Canola	nucleus	53.2	60.08
EES00292	Sorghum	nucleus	59.26	59.46
Bra023114.1-P	Field mustard	nucleus	62.29	58.54
CDY46773	Canola	nucleus	61.95	58.23
Os05t0120100-01	Rice	mitochondrion, nucleus	62.63	57.59
Bra005756.1-P	Field mustard	nucleus	44.44	57.39
GSMUA_Achr10P...	Banana	nucleus	62.63	57.23
Solyc09g005980.2.1	Tomato	nucleus	60.61	57.14
PGSC0003DMT400061471	Potato	nucleus	60.61	57.14
GSMUA_Achr6P15450_001	Banana	nucleus	64.31	56.68
TraesCS1B01G065900.2	Wheat	nucleus	64.31	56.01
Os03t0285900-01	Rice	nucleus	61.95	55.76
TraesCS1D01G051900.1	Wheat	nucleus	63.97	55.56
TraesCS1A01G049700.1	Wheat	nucleus	63.64	55.26
Os01t0155600-01	Rice	nucleus	60.27	55.25
TraesCS1A01G108000.2	Wheat	nucleus	51.52	55.04
EES18924	Sorghum	nucleus	62.96	54.84
TraesCS1D01G111000.2	Wheat	nucleus	52.86	54.7
TraesCS1B01G130200.3	Wheat	nucleus	52.86	54.7
Zm00001d011005_P005	Maize	nucleus	63.3	53.26
HORVU1Hr1G024060.21	Barley	nucleus	53.54	53.18
Zm00001d011004_P008	Maize	nucleus	60.27	52.96
TraesCS3B01G151100.1	Wheat	nucleus	56.9	52.32
TraesCS3D01G134500.1	Wheat	nucleus	56.23	51.54
HORVU1Hr1G009950.7	Barley	nucleus, plastid	62.96	50.82
TraesCS3A01G308000.1	Wheat	nucleus	56.9	50.75
KXG21387	Sorghum	nucleus	44.44	49.81
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	61.28	49.06
Zm00001d037543_P001	Maize	nucleus	28.62	47.22
OQU77498	Sorghum	nucleus	17.17	45.95
Os05t0162600-01	Rice	nucleus	46.46	40.83
Zm00001d035551_P007	Maize	nucleus	45.12	34.18
KRG96443	Soybean	nucleus	29.63	28.11
KRH64312	Soybean	nucleus	24.58	27.34
KRH53616	Soybean	nucleus	23.57	26.62
KXG21391	Sorghum	nucleus	35.35	26.25
KRH68188	Soybean	nucleus	25.59	25.42
KRH75557	Soybean	cytosol	9.43	25.23
KRG92904	Soybean	nucleus	23.23	25.0

Protein Annotations

EntrezGene:100789337	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02012140	EnsemblPlantsGene:GLYMA_19G176200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	UniProt:I1NA32
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRG95883	ProteinID:KRG95883	ProteinID:KRG95883.1
ProteinID:KRG95884.1	ProteinID:KRG95885.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000233F2F4	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:43610597..43614146

Molecular Weight (calculated)

33574.2 Da

IEP (calculated)

10.602

GRAVY (calculated)

-1.567

Length

297 amino acids

Sequence
(BLAST)

001: MPRYDDKYGN TRLYVGRLSS RTRSRDLERV FSRYGRIRGV DMKNDFAFVE FSDPRDADDA RYSLDGRDVE GSRIIVEFAK GGPRGSRENL GRGLPPGSGR
101: CFNCGIDGHW ARDCKAGDWK NKCYRCGERG HIEKNCKNSP KKSSRHGRSL SRSPVRSHSP RRGRSRDRSY SRDRNYSRSR SPVRRERSPV SEDRSQSPEP
201: SKIRKHSTSP DQSSPRKRGD PAPGNDRLAT LQDGSDYSDG PRGKSRSPAS PARDHDEGNY DSPKASGRSH SPSRSPREDD RSPIDEDDDN NRRSGSP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.