Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92904 | Soybean | nucleus | 54.95 | 22.1 |
| KRH64312 | Soybean | nucleus | 41.44 | 17.23 |
| KRH68188 | Soybean | nucleus | 45.95 | 17.06 |
| KRH53616 | Soybean | nucleus | 38.74 | 16.35 |
| KRG96443 | Soybean | nucleus | 45.95 | 16.29 |
| KRG95876 | Soybean | nucleus | 29.73 | 11.5 |
| KRH67593 | Soybean | endoplasmic reticulum | 28.83 | 11.15 |
| KRH67596 | Soybean | nucleus | 28.83 | 10.7 |
| KRG95883 | Soybean | nucleus | 25.23 | 9.43 |
| KRH42195 | Soybean | endoplasmic reticulum | 20.72 | 8.36 |
| KRH58317 | Soybean | nucleus | 11.71 | 5.94 |
Protein Annotations
| EMBL:ACUP02000378 | EnsemblPlants:KRH75557 | EnsemblPlantsGene:GLYMA_01G092500 | Gene3D:3.30.70.330 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | ProteinID:KRH75557 | ProteinID:KRH75557.1 | SEG:seg | UniParc:UPI0006ED6896 |
| UniProt:A0A0R0LFV0 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:27984661..27985198
Molecular Weight (calculated)
13249.5 Da
IEP (calculated)
10.405
GRAVY (calculated)
-0.680
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGIVDYTNY DDMKYAIRKL DDSEFRNAFS RAFIRLLLLM YISDWSRSPS RDSRRSYSRS LSRSPYISRS RSHSRNRSHS YSDRSRRFTL VALVNYDSVY
101: IFGSFEELTK S
101: IFGSFEELTK S
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.