Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67596 | Soybean | nucleus | 68.49 | 50.17 |
| KRG95883 | Soybean | nucleus | 64.38 | 47.47 |
| KRH42195 | Soybean | endoplasmic reticulum | 57.53 | 45.82 |
| KRH67593 | Soybean | endoplasmic reticulum | 55.25 | 42.16 |
| KRG95876 | Soybean | nucleus | 55.25 | 42.16 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 49.77 | 40.98 |
| Zm00001d037543_P001 | Maize | nucleus | 27.4 | 33.33 |
| CDX80835 | Canola | nucleus | 39.73 | 32.83 |
| CDX73550 | Canola | nucleus | 42.47 | 32.75 |
| CDY11223 | Canola | nucleus | 39.27 | 32.7 |
| CDX78183 | Canola | nucleus | 42.01 | 32.51 |
| CDX79732 | Canola | nucleus | 43.38 | 32.42 |
| KXG21152 | Sorghum | nucleus | 46.12 | 32.37 |
| EES00292 | Sorghum | nucleus | 43.38 | 32.09 |
| Bra005756.1-P | Field mustard | nucleus | 33.33 | 31.74 |
| AT2G37340.1 | Thale cress | nucleus | 42.01 | 31.72 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 41.1 | 31.69 |
| CDY07586 | Canola | mitochondrion, nucleus | 41.1 | 31.25 |
| Bra007004.1-P | Field mustard | nucleus | 42.01 | 30.98 |
| CDY52755 | Canola | mitochondrion, nucleus | 41.1 | 30.93 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 41.1 | 30.93 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 47.03 | 30.56 |
| Solyc09g005980.2.1 | Tomato | nucleus | 43.38 | 30.16 |
| Bra023114.1-P | Field mustard | nucleus | 43.38 | 30.06 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 44.29 | 30.03 |
| GSMUA_Achr10P... | Banana | nucleus | 44.29 | 29.85 |
| PGSC0003DMT400061471 | Potato | nucleus | 42.92 | 29.84 |
| CDY46773 | Canola | nucleus | 42.92 | 29.75 |
| Os01t0155600-01 | Rice | nucleus | 42.92 | 29.01 |
| Os03t0285900-01 | Rice | nucleus | 43.38 | 28.79 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 37.44 | 28.57 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 37.44 | 28.57 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 44.29 | 28.45 |
| EES18924 | Sorghum | nucleus | 43.84 | 28.15 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 43.84 | 28.07 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 43.38 | 27.78 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 35.16 | 27.7 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 37.44 | 27.42 |
| Zm00001d011005_P005 | Maize | nucleus | 43.84 | 27.2 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 39.73 | 26.93 |
| Zm00001d011004_P008 | Maize | nucleus | 41.55 | 26.92 |
| TraesCS3D01G134500.1 | Wheat | nucleus | 39.27 | 26.54 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 39.73 | 26.13 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 42.92 | 25.54 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 42.92 | 25.34 |
| KXG21387 | Sorghum | nucleus | 28.31 | 23.4 |
| Os05t0162600-01 | Rice | nucleus | 31.96 | 20.71 |
| Zm00001d035551_P007 | Maize | nucleus | 28.31 | 15.82 |
| KRG96443 | Soybean | nucleus | 20.09 | 14.06 |
| OQU77498 | Sorghum | nucleus | 6.85 | 13.51 |
| KRH64312 | Soybean | nucleus | 15.98 | 13.11 |
| KRH53616 | Soybean | nucleus | 14.61 | 12.17 |
| KXG21391 | Sorghum | nucleus | 21.92 | 12.0 |
| KRH75557 | Soybean | cytosol | 5.94 | 11.71 |
| KRH68188 | Soybean | nucleus | 15.53 | 11.37 |
| KRG92904 | Soybean | nucleus | 13.24 | 10.51 |
Protein Annotations
| EMBL:ACUP02003249 | EnsemblPlants:KRH58317 | EnsemblPlantsGene:GLYMA_05G119700 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR001878 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF21 | PFAM:PF00098 | ProteinID:KRH58317 | ProteinID:KRH58317.1 | SEG:seg | SUPFAM:SSF57756 |
| UniParc:UPI0006EDABCF | UniProt:A0A0R0JU30 | MapMan:16.4.6.5 | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:31269954..31271937
Molecular Weight (calculated)
24354.7 Da
IEP (calculated)
9.862
GRAVY (calculated)
-1.405
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNYFAFFRS SSADDARYNL DGRDVEGRHI TGPCGSQEYL GRGPPTGPGR CFNCGIDDHW ARDSKAGHRK NKSYQFGGRG HIEKNCKNSP KKLRNIRGWS
101: LSHSPVRSQS SQPSKVRKHS ASPDQSSAQK RGVTSPGSDR LATQQDGSDY SDGPRGKSKS PANLARDRDE GSYDSPKANG HSHSPSHSRI PRDDDRSHID
201: EDDENHRGYS HLEKHCLIK
101: LSHSPVRSQS SQPSKVRKHS ASPDQSSAQK RGVTSPGSDR LATQQDGSDY SDGPRGKSKS PANLARDRDE GSYDSPKANG HSHSPSHSRI PRDDDRSHID
201: EDDENHRGYS HLEKHCLIK
001: MKRDYAFVEF SDPRDADDAR YYLDGRDFDG SRITVEASRG APRGSRDNGS RGPPPGSGRC FNCGVDGHWA RDCTAGDWKN KCYRCGERGH IERNCKNSPS
101: PKKARQGGSY SRSPVKSRSP RRRRSPSRSR SYSRGRSYSR SRSPVRREKS VEDRSRSPKA MERSVSPKGR DQSLSPDRKV IDASPKRGSD YDGSPKENGN
201: GRNSASPIVG GGESPVGLNG QDRSPIDDEA ELSRPSPKGS ESP
101: PKKARQGGSY SRSPVKSRSP RRRRSPSRSR SYSRGRSYSR SRSPVRREKS VEDRSRSPKA MERSVSPKGR DQSLSPDRKV IDASPKRGSD YDGSPKENGN
201: GRNSASPIVG GGESPVGLNG QDRSPIDDEA ELSRPSPKGS ESP
Arabidopsis Description
RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.