Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G108000.2 | Wheat | nucleus | 53.15 | 21.22 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 53.15 | 20.56 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 53.15 | 20.56 |
| KXG21387 | Sorghum | nucleus | 47.75 | 20.0 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 53.15 | 19.73 |
| EES00292 | Sorghum | nucleus | 49.55 | 18.58 |
| CDY11223 | Canola | nucleus | 42.34 | 17.87 |
| CDX80835 | Canola | nucleus | 42.34 | 17.74 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 45.05 | 17.61 |
| CDX78183 | Canola | nucleus | 44.14 | 17.31 |
| CDX73550 | Canola | nucleus | 44.14 | 17.25 |
| AT2G37340.1 | Thale cress | nucleus | 45.05 | 17.24 |
| KRG95883 | Soybean | nucleus | 45.95 | 17.17 |
| KRG95876 | Soybean | nucleus | 44.14 | 17.07 |
| KRH67593 | Soybean | endoplasmic reticulum | 44.14 | 17.07 |
| KRH67596 | Soybean | nucleus | 45.95 | 17.06 |
| PGSC0003DMT400060435 | Potato | nucleus | 45.95 | 17.0 |
| CDX79732 | Canola | nucleus | 44.14 | 16.72 |
| CDY07586 | Canola | mitochondrion, nucleus | 43.24 | 16.67 |
| Bra007004.1-P | Field mustard | nucleus | 44.14 | 16.5 |
| CDY52755 | Canola | mitochondrion, nucleus | 43.24 | 16.49 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 43.24 | 16.49 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 49.55 | 16.32 |
| GSMUA_Achr10P... | Banana | nucleus | 47.75 | 16.31 |
| KXG21152 | Sorghum | nucleus | 45.05 | 16.03 |
| Solyc09g005980.2.1 | Tomato | nucleus | 44.14 | 15.56 |
| PGSC0003DMT400061471 | Potato | nucleus | 44.14 | 15.56 |
| CDY46773 | Canola | nucleus | 44.14 | 15.51 |
| Bra023114.1-P | Field mustard | nucleus | 44.14 | 15.51 |
| Solyc05g054920.2.1 | Tomato | nucleus | 45.95 | 15.13 |
| KRH42195 | Soybean | endoplasmic reticulum | 36.94 | 14.91 |
| EES18924 | Sorghum | nucleus | 45.05 | 14.66 |
| Os05t0162600-01 | Rice | nucleus | 44.14 | 14.5 |
| Bra005756.1-P | Field mustard | nucleus | 26.13 | 12.61 |
| KXG21391 | Sorghum | nucleus | 45.05 | 12.5 |
| KXG32406 | Sorghum | cytosol | 27.93 | 11.97 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 27.03 | 11.28 |
| KXG21829 | Sorghum | nucleus | 26.13 | 10.43 |
| EER94870 | Sorghum | mitochondrion, nucleus | 26.13 | 10.14 |
| KRH58317 | Soybean | nucleus | 13.51 | 6.85 |
Protein Annotations
| EnsemblPlants:OQU77498 | EnsemblPlantsGene:SORBI_3009G056032 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:OQU77498 | ProteinID:OQU77498.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000B8BAD1B | UniProt:A0A1Z5R127 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr9:-:5666218..5669148
Molecular Weight (calculated)
12797.9 Da
IEP (calculated)
6.662
GRAVY (calculated)
-0.622
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYNDPCHR YDHYSQHVSQ TKFYVGRIST STRKEDLEDI FGRYGRLQRV SLISGNYGFV EFCDPWNAYD ARYHLDRQDF KGSRIIVQFA GEDPHLVSGC
101: AAPAEGLALD C
101: AAPAEGLALD C
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.