CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER92211
EER94870
EER97037
EER97602
EES00292
EES10309
EES16196
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG32406
KXG39307
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64200.2	EER94870	AT1G02840.1	18674533
AT5G64200.2	KXG21829	AT1G02840.1	18674533
AT5G64200.2	KXG32406	AT1G02840.1	18674533
AT5G64200.2	EER88795	AT1G53720.1	16497658
AT5G64200.2	EES00292	AT2G37340.1	18674533
AT5G64200.2	EES18924	AT2G37340.1	18674533
AT5G64200.2	KXG21152	AT2G37340.1	18674533
AT5G64200.2	KXG21387	AT2G37340.1	18674533
AT5G64200.2	KXG21391	AT2G37340.1	18674533
AT5G64200.2	OQU77498	AT2G37340.1	18674533
AT5G64200.2	EER97037	AT2G43370.1	15987817
AT5G64200.2	EER92211	AT3G13570.1	18674533
AT5G64200.2	EER97602	AT3G13570.1	18674533
AT5G64200.2	EES10309	AT3G55460.1	18674533
AT5G64200.2	EES16196	AT3G55460.1	18674533
AT5G64200.2	KXG39307	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36736	Sorghum	nucleus	61.86	58.4
GSMUA_Achr10P...	Banana	nucleus	57.63	57.38
VIT_12s0142g00110.t01	Wine grape	nucleus	60.59	56.08
VIT_18s0001g05550.t01	Wine grape	nucleus	60.59	55.64
Solyc01g105140.2.1	Tomato	nucleus	59.75	55.51
PGSC0003DMT400032709	Potato	nucleus	58.9	54.72
Solyc04g074040.2.1	Tomato	nucleus	59.75	54.65
PGSC0003DMT400045694	Potato	nucleus	58.47	53.49
KRH42160	Soybean	nucleus	60.17	53.18
KRH58277	Soybean	nucleus	59.75	52.81
Os07t0623300-01	Rice	nucleus	60.59	52.0
TraesCS2D01G169700.5	Wheat	nucleus	59.75	51.27
KXG25727	Sorghum	nucleus	58.9	50.92
HORVU2Hr1G029630.1	Barley	plastid	27.54	47.79
Bra024276.1-P	Field mustard	nucleus	55.08	46.43
TraesCS2B01G188600.1	Wheat	nucleus, plastid	52.12	45.22
AT5G64200.2	Thale cress	nucleus	53.81	41.91
CDX84503	Canola	nucleus	38.14	33.21
EER92211	Sorghum	nucleus	27.97	30.99
EER97602	Sorghum	nucleus	26.69	30.14
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	48.31	26.39
EES16196	Sorghum	nucleus	28.81	25.95
EES10309	Sorghum	nucleus	27.12	23.7
KXG39307	Sorghum	nucleus	22.03	21.58
CDY43799	Canola	vacuole	26.27	19.2

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1B6QMT9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG39239	ProteinID:KXG39239	ProteinID:KXG39239.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF40	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G352300	SUPFAM:SSF54928	UniParc:UPI00081AB596	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:64143628..64147090

Molecular Weight (calculated)

27630.9 Da

IEP (calculated)

11.438

GRAVY (calculated)

-1.556

Length

236 amino acids

Sequence
(BLAST)

001: MSRFGRSGHP ENRDTFSLLV LNVSFRTTAD DLFPLFDRYG EVVDIHIPRD RRTGESRGFA FVRYNYEDEA QDAIDGLDGM RFGGRALMVQ FAKYGPNAEK
101: IHRGRITEEN PKPRGRFRSR SPRPRYREDY QDRDYRRRSQ SRSRERYEQD RYRDGDHRRH RTRSISPDYD RKHNRHSGSP VRKSPSHSRS RSPHRAPHEG
201: TPSKPRDGRS RSPRRAPHEG TPSKPRDGRA ACSGSP

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.