CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87987
EER88795
EER91800
EER92211
EER94870
EER95096
EER97037
EER97602
EES07659
EES10309
EES16196
KXG21829
KXG32406
KXG36736
KXG39239
KXG39307
OQU85289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	EER94870	AT1G02840.1	18674533
AT2G37340.1	KXG21829	AT1G02840.1	18674533
AT2G37340.1	KXG32406	AT1G02840.1	18674533
AT2G37340.1	EER88795	AT1G53720.1	16497658
AT2G37340.1	EER97037	AT2G43370.1	15987817
AT2G37340.1	EER92211	AT3G13570.1	18674533
AT2G37340.1	EER97602	AT3G13570.1	18674533
AT2G37340.1	EER91800	AT3G50670.1	18674533
AT2G37340.1	EER95096	AT3G50670.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	18674533
AT2G37340.1	EES16196	AT3G55460.1	18674533
AT2G37340.1	EES10309	AT3G55460.1	21798944
AT2G37340.1	EES16196	AT3G55460.1	21798944
AT2G37340.1	EER87987	AT4G31580.1	18674533
AT2G37340.1	EES07659	AT4G31580.1	18674533
AT2G37340.1	OQU85289	AT4G31580.1	18674533
AT2G37340.1	KXG39307	AT5G18810.1	18674533
AT2G37340.1	KXG36736	AT5G64200.2	18674533
AT2G37340.1	KXG39239	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21152	Sorghum	nucleus	77.71	84.94
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	92.08	84.64
Os05t0120100-01	Rice	mitochondrion, nucleus	77.71	82.04
Os03t0285900-01	Rice	nucleus	77.13	79.7
TraesCS1A01G049700.1	Wheat	nucleus	72.43	72.22
TraesCS1D01G051900.1	Wheat	nucleus	72.14	71.93
TraesCS1B01G065900.2	Wheat	nucleus	71.55	71.55
PGSC0003DMT400060435	Potato	nucleus	58.94	67.0
HORVU1Hr1G009950.7	Barley	nucleus, plastid	71.85	66.58
KRH67593	Soybean	endoplasmic reticulum	55.13	65.51
KRG95876	Soybean	nucleus	54.84	65.16
GSMUA_Achr10P...	Banana	nucleus	61.88	64.92
EES00292	Sorghum	nucleus	56.01	64.53
KRH67596	Soybean	nucleus	56.01	63.88
KRG95883	Soybean	nucleus	54.84	62.96
GSMUA_Achr6P15450_001	Banana	nucleus	62.17	62.91
CDX78183	Canola	nucleus	51.32	61.84
CDX79732	Canola	nucleus	53.08	61.77
VIT_08s0040g02860.t01	Wine grape	nucleus	48.09	61.65
CDX73550	Canola	nucleus	51.32	61.62
AT3G53500.2	Thale cress	mitochondrion, nucleus	50.73	60.92
AT2G37340.1	Thale cress	nucleus	51.61	60.69
CDX80835	Canola	nucleus	46.92	60.38
CDY11223	Canola	nucleus	46.04	59.7
CDY07586	Canola	mitochondrion, nucleus	50.15	59.38
Solyc05g054920.2.1	Tomato	nucleus	58.65	59.35
Bra007004.1-P	Field mustard	nucleus	51.32	58.92
CDY52755	Canola	mitochondrion, nucleus	50.15	58.76
Bra003139.1-P	Field mustard	mitochondrion, nucleus	50.15	58.76
PGSC0003DMT400061471	Potato	nucleus	53.08	57.46
Solyc09g005980.2.1	Tomato	nucleus	53.08	57.46
Bra023114.1-P	Field mustard	nucleus	53.08	57.28
CDY46773	Canola	nucleus	52.79	56.96
Bra005756.1-P	Field mustard	nucleus	37.83	56.09
KXG21387	Sorghum	nucleus	40.47	52.08
KRH42195	Soybean	endoplasmic reticulum	38.42	47.64
OQU77498	Sorghum	nucleus	14.66	45.05
KRH58317	Soybean	nucleus	28.15	43.84
KXG32406	Sorghum	cytosol	26.39	34.75
KXG21829	Sorghum	nucleus	26.98	33.09
EER94870	Sorghum	mitochondrion, nucleus	26.1	31.12
KXG21391	Sorghum	nucleus	34.6	29.5

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:8067361	UniProt:C5YZ00	EnsemblPlants:EES18924
ProteinID:EES18924	ProteinID:EES18924.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EMBL:KC425060	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF25
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3009G022100	SUPFAM:SSF54928
SUPFAM:SSF57756	unigene:Sbi.14681	UniParc:UPI0001A88A88	RefSeq:XP_002440494.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1973814..1977730

Molecular Weight (calculated)

38053.5 Da

IEP (calculated)

11.514

GRAVY (calculated)

-1.598

Length

341 amino acids

Sequence
(BLAST)

001: MPRYDDRYGG TRLYVGRLAP RTRSRDLEYL FGRYGRIREV ELKRDYAFIE FSDHRDADEA RYQLDGRDVD GSRIVVEFAK GVPRGPGGSR EYMGRGPPPG
101: TGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPRSVRRER SYSRSPSPRR GRGRSPSYSR SRSRSRSRSY SRSRSLSGSP RGGRRDRDDR
201: RSRSLSYSRS PMRSASPPPK EKERSPTPDG SRSPRSRSPQ DQVMSPPPKD NGEGNGSDRG ESPRGRETSR SRSRSRSPSG DNRSPAANGR SPSPRGDRSP
301: SPRADRSPSP KADRSPSPKG NGNNDDDDAA RGASPAGSKS P

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.