Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- plastid 1
- mitochondrion 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0316600-01 | |
| Os02t0252100-02 | |
| Os02t0610600-01 | |
| Os02t0789400-01 | |
| Os03t0344100-02 | |
| Os03t0363800-01 | |
| Os03t0374575-01 | |
| Os05t0364600-01 | |
| Os06t0187900-02 | |
| Os06t0670400-00 | |
| Os06t0670500-01 | |
| Os07t0623300-01 | |
| Os07t0633200-02 | |
| Os07t0673500-01 | |
| Os09t0513700-01 | |
| Os10t0115600-02 | |
| Os11t0704700-01 | |
| Os12t0572400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37340.1 | Os01t0316600-01 | AT1G02840.1 | 18674533 |
| AT2G37340.1 | Os03t0344100-02 | AT1G02840.1 | 18674533 |
| AT2G37340.1 | Os05t0364600-01 | AT1G02840.1 | 18674533 |
| AT2G37340.1 | Os07t0673500-01 | AT1G02840.1 | 18674533 |
| AT2G37340.1 | Os06t0670400-00 | AT1G53720.1 | 16497658 |
| AT2G37340.1 | Os06t0670500-01 | AT1G53720.1 | 16497658 |
| AT2G37340.1 | Os09t0513700-01 | AT2G43370.1 | 15987817 |
| AT2G37340.1 | Os03t0374575-01 | AT3G13570.1 | 18674533 |
| AT2G37340.1 | Os07t0633200-02 | AT3G13570.1 | 18674533 |
| AT2G37340.1 | Os10t0115600-02 | AT3G50670.1 | 18674533 |
| AT2G37340.1 | Os02t0252100-02 | AT3G55460.1 | 18674533 |
| AT2G37340.1 | Os11t0704700-01 | AT3G55460.1 | 18674533 |
| AT2G37340.1 | Os12t0572400-01 | AT3G55460.1 | 18674533 |
| AT2G37340.1 | Os02t0252100-02 | AT3G55460.1 | 21798944 |
| AT2G37340.1 | Os11t0704700-01 | AT3G55460.1 | 21798944 |
| AT2G37340.1 | Os12t0572400-01 | AT3G55460.1 | 21798944 |
| AT2G37340.1 | Os02t0610600-01 | AT4G31580.1 | 18674533 |
| AT2G37340.1 | Os02t0789400-01 | AT4G31580.1 | 18674533 |
| AT2G37340.1 | Os06t0187900-02 | AT4G31580.1 | 18674533 |
| AT2G37340.1 | Os03t0363800-01 | AT5G18810.1 | 18674533 |
| AT2G37340.1 | Os07t0623300-01 | AT5G64200.2 | 18674533 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0285900-01 | Rice | nucleus | 91.33 | 89.39 |
| KXG21152 | Sorghum | nucleus | 79.26 | 82.05 |
| EES18924 | Sorghum | nucleus | 82.04 | 77.71 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 78.64 | 74.27 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 78.64 | 74.27 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 78.33 | 74.19 |
| Zm00001d011005_P005 | Maize | nucleus | 80.5 | 73.65 |
| Zm00001d011004_P008 | Maize | nucleus | 74.61 | 71.3 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 81.73 | 71.16 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 78.64 | 69.02 |
| PGSC0003DMT400060435 | Potato | nucleus | 62.85 | 67.67 |
| KRH67593 | Soybean | endoplasmic reticulum | 59.13 | 66.55 |
| KRG95876 | Soybean | nucleus | 58.82 | 66.2 |
| GSMUA_Achr10P... | Banana | nucleus | 66.25 | 65.85 |
| KRH67596 | Soybean | nucleus | 59.75 | 64.55 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 65.63 | 62.91 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 51.7 | 62.78 |
| Os01t0155600-01 | Rice | nucleus | 62.85 | 62.65 |
| KRG95883 | Soybean | nucleus | 57.59 | 62.63 |
| CDX79732 | Canola | nucleus | 56.35 | 62.12 |
| CDX78183 | Canola | nucleus | 54.18 | 61.84 |
| CDX80835 | Canola | nucleus | 50.46 | 61.51 |
| CDX73550 | Canola | nucleus | 53.87 | 61.27 |
| AT2G37340.1 | Thale cress | nucleus | 54.8 | 61.03 |
| CDY11223 | Canola | nucleus | 49.54 | 60.84 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 53.25 | 60.56 |
| Solyc05g054920.2.1 | Tomato | nucleus | 62.54 | 59.94 |
| Solyc09g005980.2.1 | Tomato | nucleus | 58.2 | 59.68 |
| CDY07586 | Canola | mitochondrion, nucleus | 52.94 | 59.38 |
| PGSC0003DMT400061471 | Potato | nucleus | 57.59 | 59.05 |
| Bra007004.1-P | Field mustard | nucleus | 54.18 | 58.92 |
| CDY52755 | Canola | mitochondrion, nucleus | 52.94 | 58.76 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 52.94 | 58.76 |
| Bra005756.1-P | Field mustard | nucleus | 41.49 | 58.26 |
| Bra023114.1-P | Field mustard | nucleus | 56.35 | 57.59 |
| CDY46773 | Canola | nucleus | 56.04 | 57.28 |
| KRH42195 | Soybean | endoplasmic reticulum | 42.41 | 49.82 |
| KRH58317 | Soybean | nucleus | 30.03 | 44.29 |
| Os05t0162600-01 | Rice | nucleus | 44.58 | 42.6 |
| Zm00001d035551_P007 | Maize | nucleus | 51.08 | 42.09 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 29.1 | 32.87 |
| Os05t0364600-01 | Rice | nucleus | 30.96 | 31.35 |
| Os07t0673500-01 | Rice | nucleus | 28.17 | 30.74 |
| Os01t0316600-01 | Rice | plastid | 6.5 | 16.94 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:4337644 | ProteinID:BAF16403.1 | ProteinID:BAS92008.1 |
| ProteinID:EEE62137.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os05g0120100 | EnsemblPlants:Os05t0120100-01 |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 |
| UniProt:Q0DL70 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 |
| SUPFAM:SSF57756 | UniParc:UPI0000E12310 | RefSeq:XP_015640656.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg |
Description
Similar to Splicing factor RSZ33. (Os05t0120100-01);Similar to Splicing factor, arginine/serine-rich 6. (Os05t0120100-02)
Coordinates
chr5:-:1045879..1049359
Molecular Weight (calculated)
36224.4 Da
IEP (calculated)
11.306
GRAVY (calculated)
-1.549
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYGS TRLYVGRLSS RTRSRDLEYH FSRYGRIREV ELKRDYAFIE FSDPRDAEEA RYNLDGRDVD GSRILVEFAK GVPRGPGGSR EYMGRGPPPG
101: TGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPRNLRRER SYSCSPSPRR GRGRSRSYSR SRSRSRSYSR SRSRSLSGSP RARRELERSR
201: SLSYSRSPRR SISPAANEKK RSPTPDGSRS PRSPQDQVSP PPKDNAERNG SDHGDSPRGR ENSRSPSDGY RSPAAANGRS PSPRNNGSPS PMDNGSRSPR
301: DGNGDGGSRG GSRSPRPSES PEA
101: TGRCFNCGID GHWARDCKAG DWKNKCYRCG ERGHIERNCQ NSPRNLRRER SYSCSPSPRR GRGRSRSYSR SRSRSRSYSR SRSRSLSGSP RARRELERSR
201: SLSYSRSPRR SISPAANEKK RSPTPDGSRS PRSPQDQVSP PPKDNAERNG SDHGDSPRGR ENSRSPSDGY RSPAAANGRS PSPRNNGSPS PMDNGSRSPR
301: DGNGDGGSRG GSRSPRPSES PEA
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.