Factsheet for Os02t0610600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os03t0285900-01
Os03t0344100-02
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os07t0673500-01
Os08t0139000-02
Os10t0115600-02
Os12t0460800-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Os01t0316600-01	AT1G09140.1	21798944
AT2G24590.1	Os03t0344100-02	AT1G09140.1	21798944
AT2G24590.1	Os05t0364600-01	AT1G09140.1	21798944
AT2G24590.1	Os07t0673500-01	AT1G09140.1	21798944
AT2G24590.1	Os01t0590900-01	AT4G32660.1	21798944
AT2G24590.1	Os08t0139000-02	AT5G54580.1	21798944
AT4G31580.1	Os01t0155600-01	AT2G37340.1	18674533
AT4G31580.1	Os03t0285900-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0120100-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0162600-01	AT2G37340.1	18674533
AT4G31580.1	Os10t0115600-02	AT3G50670.1	10593939
AT4G31580.1	Os10t0115600-02	AT3G50670.1	9761791
AT4G31580.1	Os12t0460800-03	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0187900-02	Rice	nucleus	70.5	76.22
GSMUA_Achr8P24800_001	Banana	nucleus	69.0	75.82
GSMUA_Achr4P09230_001	Banana	nucleus	67.0	74.44
Os02t0789400-01	Rice	nucleus	66.5	71.89
VIT_04s0069g00800.t01	Wine grape	nucleus	62.5	69.06
PGSC0003DMT400067677	Potato	nucleus	63.0	68.85
KRH16160	Soybean	endoplasmic reticulum	59.0	66.29
KRH04931	Soybean	nucleus	59.0	66.29
PGSC0003DMT400075974	Potato	nucleus	60.5	66.12
TraesCS6B01G248500.1	Wheat	nucleus	79.5	63.86
CDX72313	Canola	nucleus	60.0	60.91
CDY13444	Canola	nucleus	60.0	60.3
Bra023994.1-P	Field mustard	nucleus	59.5	59.8
AT4G31580.1	Thale cress	nucleus	59.5	59.5
TraesCS6A01G219000.2	Wheat	nucleus	73.0	59.11
Zm00001d017177_P007	Maize	nucleus	74.5	58.89
AT2G24590.1	Thale cress	nucleus	57.0	58.16
CDY45585	Canola	nucleus	56.5	57.65
CDY20328	Canola	nucleus	56.5	57.65
Bra032082.1-P	Field mustard	nucleus	56.5	55.66
TraesCS6D01G202100.1	Wheat	nucleus	72.0	53.53
Zm00001d051052_P001	Maize	nucleus	71.5	51.62
Solyc08g069120.2.1	Tomato	nucleus	61.0	50.21
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.5	48.72
OQU85289	Sorghum	plastid	75.5	47.63

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4329951	EMBL:AK060088	EMBL:AK099572
EMBL:AK104726	ProteinID:BAD19227.1	ProteinID:BAF09314.1	ProteinID:BAS79708.1	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008380
GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os02g0610600	EnsemblPlants:Os02t0610600-01	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF23	UniProt:Q6K9C3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00003757DB	RefSeq:XP_015625857.1	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

RSZ23Similar to 9G8-like SR protein (RSZp22 splicing factor). (Os02t0610600-01)

Coordinates

chr2:-:23992509..23996356

Molecular Weight (calculated)

22798.5 Da

IEP (calculated)

11.831

GRAVY (calculated)

-1.327

Length

200 amino acids

Sequence
(BLAST)

001: MARVYVGNLD PRVTAREIED EFRVFGVLRS VWVARKPPGF AFIDFDDRRD AEDAIRDLDG KNGWRVELST KAGSGRGRDR SGGSDMKCYE CGEPGHFARE
101: CRLRIGSGGL GSGRRRSRSR SRSPRYRGRS RSRSPRYRRS PSYGRSPRDR SPKRRSYSRS PPPARARSYS RSPPPPRERS YSRSPAQPAN REESPYANNA

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.