CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68873
CDX75268
CDX95008
CDY06428
CDY27533
CDY37307
CDY42466
CDY43035
CDY43820
CDY64931
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	CDX95008	AT1G09140.1	21798944
AT2G24590.1	CDY66028	AT1G09140.1	21798944
AT2G24590.1	CDY06428	AT3G21215.1	21798944
AT2G24590.1	CDY27533	AT3G21215.1	21798944
AT2G24590.1	CDY37307	AT3G21215.1	21798944
AT2G24590.1	CDX68873	AT4G32660.1	21798944
AT2G24590.1	CDX75268	AT4G32660.1	21798944
AT2G24590.1	CDY42466	AT5G54580.1	21798944
AT2G24590.1	CDY43035	AT5G54580.1	21798944
AT2G24590.1	CDY43820	AT5G54580.1	21798944
AT2G24590.1	CDY64931	AT5G54580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45585	Canola	nucleus	100.0	100.0
Bra032082.1-P	Field mustard	nucleus	98.47	95.07
AT2G24590.1	Thale cress	nucleus	82.65	82.65
KRH16160	Soybean	endoplasmic reticulum	72.96	80.34
KRH04931	Soybean	nucleus	72.96	80.34
PGSC0003DMT400067677	Potato	nucleus	74.49	79.78
CDY13444	Canola	nucleus	80.1	78.89
PGSC0003DMT400075974	Potato	nucleus	72.96	78.14
CDX72313	Canola	nucleus	77.55	77.16
CDY59084	Canola	nucleus	48.98	73.85
EES07659	Sorghum	nucleus	55.61	66.87
CDY47646	Canola	nucleus	61.73	65.41
Os06t0187900-02	Rice	nucleus	60.71	64.32
TraesCS6D01G332000.1	Wheat	nucleus	62.76	63.4
TraesCS7B01G056600.2	Wheat	nucleus	59.18	63.39
GSMUA_Achr4P09230_001	Banana	nucleus	58.16	63.33
TraesCSU01G104300.1	Wheat	nucleus	58.67	63.19
GSMUA_Achr8P24800_001	Banana	nucleus	58.67	63.19
TraesCS7A01G152800.1	Wheat	nucleus	58.67	63.19
TraesCS6A01G349500.1	Wheat	nucleus	62.24	62.89
TraesCS6B01G382600.1	Wheat	nucleus	62.24	62.89
EER87987	Sorghum	nucleus	59.18	62.37
Os02t0789400-01	Rice	nucleus	58.67	62.16
Solyc08g069120.2.1	Tomato	nucleus	72.96	58.85
Os02t0610600-01	Rice	nucleus	57.65	56.5
Zm00001d045330_P001	Maize	nucleus	38.78	50.0
Zm00001d052062_P002	Maize	extracellular	45.41	50.0
HORVU6Hr1G083840.4	Barley	plastid	62.24	49.59
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	38.27	49.34
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	9.18	46.15
Zm00001d045076_P001	Maize	nucleus	48.98	45.93
TraesCS6A01G219000.2	Wheat	nucleus	57.14	45.34
TraesCS6B01G248500.1	Wheat	nucleus	57.14	44.98
Zm00001d017177_P007	Maize	nucleus	56.12	43.48
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	50.51	42.67
TraesCS6D01G202100.1	Wheat	nucleus	58.16	42.38
Zm00001d051052_P001	Maize	nucleus	59.18	41.88
HORVU7Hr1G031320.1	Barley	nucleus	58.67	39.93
Zm00001d028789_P001	Maize	cytosol	44.39	39.19
OQU85289	Sorghum	plastid	57.14	35.33

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078I462	UniProt:A0A078I462	EnsemblPlants:CDY20328
ProteinID:CDY20328	ProteinID:CDY20328.1	ProteinID:CDY45585.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00012271001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0001D840E0	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

BnaC04g36280DBnaA04g14520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I462]

Coordinates

chrLK032105:+:654671..656954

Molecular Weight (calculated)

22035.6 Da

IEP (calculated)

11.547

GRAVY (calculated)

-1.454

Length

196 amino acids

Sequence
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRVYGVIKS VWVARRPPGY AFLDFEDSRD ARDAIRDLDG KNGWRVEESH NRGGGGGRGG RGGGDGGRGR GGSDLKCYEC
101: GEPGHFAREC RSRGGSGRRR SPSPRGRSPP RYRKSPTYGE RRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRGRDEV PYANGNGLKD VRRSRS

Best Arabidopsis Sequence Match ( AT2G24590.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS

Arabidopsis Description

RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.