Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045330_P001 | Maize | nucleus | 79.61 | 79.61 |
| EES07659 | Sorghum | nucleus | 74.34 | 69.33 |
| Os02t0789400-01 | Rice | nucleus | 65.79 | 54.05 |
| Zm00001d028789_P001 | Maize | cytosol | 78.29 | 53.6 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 63.82 | 53.3 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 62.5 | 52.78 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 65.13 | 51.03 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 64.47 | 50.52 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 64.47 | 50.52 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 76.32 | 50.0 |
| Zm00001d045076_P001 | Maize | nucleus | 67.76 | 49.28 |
| Zm00001d052062_P002 | Maize | extracellular | 54.61 | 46.63 |
| PGSC0003DMT400067677 | Potato | nucleus | 55.92 | 46.45 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 54.61 | 45.86 |
| PGSC0003DMT400075974 | Potato | nucleus | 53.29 | 44.26 |
| KRH04931 | Soybean | nucleus | 51.32 | 43.82 |
| KRH16160 | Soybean | endoplasmic reticulum | 51.32 | 43.82 |
| AT4G31580.1 | Thale cress | nucleus | 55.26 | 42.0 |
| CDX72313 | Canola | nucleus | 53.95 | 41.62 |
| CDY13444 | Canola | nucleus | 53.95 | 41.21 |
| Bra023994.1-P | Field mustard | nucleus | 53.29 | 40.7 |
| AT2G24590.1 | Thale cress | nucleus | 51.97 | 40.31 |
| HORVU6Hr1G083840.4 | Barley | plastid | 64.47 | 39.84 |
| CDY45585 | Canola | nucleus | 49.34 | 38.27 |
| CDY20328 | Canola | nucleus | 49.34 | 38.27 |
| Bra032082.1-P | Field mustard | nucleus | 49.34 | 36.95 |
| Zm00001d017177_P007 | Maize | nucleus | 59.87 | 35.97 |
| Zm00001d051052_P001 | Maize | nucleus | 61.84 | 33.94 |
| Solyc08g069120.2.1 | Tomato | nucleus | 53.95 | 33.74 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 2.63 | 10.26 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:4.10.60.10 | UniProt:A0A1D6ED98 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001878 | ProteinID:ONM18265.1 |
| PFAM:PF00098 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | SMART:SM00343 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | TMHMM:TMhelix | UniParc:UPI00084383D8 | EnsemblPlantsGene:Zm00001d004066 | EnsemblPlants:Zm00001d004066_P001 |
| EnsemblPlants:Zm00001d004066_T001 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
Serine/arginine-rich splicing factor RSZ22
Coordinates
chr2:+:80058017..80059465
Molecular Weight (calculated)
17326.3 Da
IEP (calculated)
10.636
GRAVY (calculated)
-0.697
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVYVGNLD SRVTSGELED EFRVFGVLRR RDAEDAISDL DGKNGWRVEL SRNSSGRGGR DRYGGSESKC YECGETGHFA RECRLRIASG GLGSGRRRSR
101: SRSRSRSGSP RYRRSRSRSR ISVDEAHAFI YMNIFLTMFF FFLFSCHANQ WV
101: SRSRSRSGSP RYRRSRSRSR ISVDEAHAFI YMNIFLTMFF FFLFSCHANQ WV
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.