Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94870 | Sorghum | mitochondrion, nucleus | 96.84 | 96.5 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 90.18 | 89.86 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 88.07 | 85.67 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 87.02 | 84.64 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 87.02 | 83.78 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 84.91 | 82.03 |
| Bra018581.1-P | Field mustard | cytosol | 56.49 | 69.4 |
| CDY66028 | Canola | cytosol | 59.65 | 67.19 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 67.02 | 66.32 |
| Solyc01g099810.2.1 | Tomato | nucleus | 61.05 | 65.91 |
| CDX91319 | Canola | nucleus | 68.42 | 65.22 |
| Zm00001d040672_P013 | Maize | nucleus | 66.32 | 64.51 |
| KRG92904 | Soybean | nucleus | 61.4 | 63.41 |
| CDX97264 | Canola | nucleus | 67.72 | 63.28 |
| PGSC0003DMT400029666 | Potato | nucleus | 69.82 | 63.17 |
| AT1G09140.1 | Thale cress | cytosol | 59.3 | 63.06 |
| Bra018550.1-P | Field mustard | nucleus | 57.54 | 62.84 |
| CDY22050 | Canola | nucleus | 68.07 | 62.78 |
| AT1G02840.1 | Thale cress | nucleus | 66.67 | 62.71 |
| CDY50385 | Canola | nucleus | 67.37 | 62.34 |
| Bra036267.1-P | Field mustard | nucleus | 68.07 | 62.18 |
| KRG96443 | Soybean | nucleus | 67.37 | 61.34 |
| Zm00001d041673_P001 | Maize | cytosol | 24.21 | 60.53 |
| Solyc09g075090.1.1 | Tomato | nucleus | 64.21 | 60.0 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 61.4 | 59.93 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 64.56 | 59.74 |
| AT4G02430.4 | Thale cress | nucleus | 61.05 | 59.59 |
| KRH68188 | Soybean | nucleus | 62.46 | 59.53 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 62.46 | 51.45 |
| CDX95008 | Canola | nucleus | 55.44 | 49.84 |
| PGSC0003DMT400063701 | Potato | nucleus | 56.49 | 48.79 |
| Solyc06g009060.2.1 | Tomato | nucleus | 40.7 | 44.27 |
| Zm00001d011004_P008 | Maize | nucleus | 32.28 | 27.22 |
| Zm00001d009821_P001 | Maize | plastid | 29.82 | 26.73 |
| Zm00001d037543_P001 | Maize | nucleus | 16.49 | 26.11 |
| Zm00001d011005_P005 | Maize | nucleus | 31.93 | 25.78 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 30.88 | 23.72 |
| Zm00001d035551_P007 | Maize | nucleus | 25.26 | 18.37 |
Protein Annotations
| EntrezGene:100217203 | MapMan:16.4.6.1 | Gene3D:3.30.70.330 | ProteinID:AAU29328.1 | ProteinID:AQL06763.1 | ProteinID:AQL06773.1 |
| ProteinID:AQL06774.1 | ProteinID:AQL06777.1 | ProteinID:AQL06778.1 | ProteinID:AQL06779.1 | ProteinID:AQL06780.1 | EMBL:BT036022 |
| EMBL:BT038120 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 |
| UniProt:Q64HC3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000440509 |
| EnsemblPlantsGene:Zm00001d047498 | EnsemblPlants:Zm00001d047498_P003 | EnsemblPlants:Zm00001d047498_T003 | SEG:seg | : | : |
Description
Serine/arginine-rich-splicing factor SR34
Coordinates
chr9:-:132739902..132744754
Molecular Weight (calculated)
31639.5 Da
IEP (calculated)
10.866
GRAVY (calculated)
-1.138
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GKIVDIDLKV PPRPPGYAFV EFEDPRDAEE AIAGRDGYNF DGHRLRVEAA HGGRGNASSH DRSSGFGGGG
101: GARRGVSRHS EYRVLVTGLP SSASWQDLKD HMRKAGDVCF SEVYREGGGT VGIVDYTNYD DMKYAIKKLD DTEFRNAFGR AYIRVKEYNG KRGRSYSRSR
201: SPSRSYSKSR SPSKSPRTRR SSSRSRSRSV SSRSRSPSKG RSPSRSPARS KSPNVSPANG EAASPKKQSP NRSPSGSRSP DAKPE
101: GARRGVSRHS EYRVLVTGLP SSASWQDLKD HMRKAGDVCF SEVYREGGGT VGIVDYTNYD DMKYAIKKLD DTEFRNAFGR AYIRVKEYNG KRGRSYSRSR
201: SPSRSYSKSR SPSKSPRTRR SSSRSRSRSV SSRSRSPSKG RSPSRSPARS KSPNVSPANG EAASPKKQSP NRSPSGSRSP DAKPE
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.