Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97602 | Sorghum | nucleus | 91.87 | 91.87 |
| Os07t0633200-02 | Rice | nucleus | 79.9 | 78.4 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 73.68 | 74.4 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 72.73 | 74.15 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 72.25 | 73.66 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 72.73 | 73.08 |
| Zm00001d047401_P001 | Maize | nucleus | 69.38 | 67.13 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 65.55 | 63.13 |
| Bra034794.1-P | Field mustard | nucleus | 62.2 | 62.8 |
| CDY08473 | Canola | nucleus | 61.24 | 62.44 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 71.77 | 61.22 |
| Zm00001d029629_P001 | Maize | nucleus | 12.92 | 60.0 |
| Zm00001d005285_P001 | Maize | nucleus | 39.71 | 58.04 |
| Zm00001d019443_P002 | Maize | nucleus | 29.19 | 57.55 |
| Zm00001d004470_P001 | Maize | nucleus | 30.14 | 56.76 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 66.51 | 56.73 |
| KRH16958 | Soybean | nucleus | 66.99 | 56.22 |
| Solyc01g005820.2.1 | Tomato | nucleus | 66.03 | 54.76 |
| Zm00001d016504_P001 | Maize | nucleus | 19.62 | 54.67 |
| KRH72576 | Soybean | nucleus | 66.03 | 54.55 |
| PGSC0003DMT400081835 | Potato | nucleus | 64.59 | 54.44 |
| CDY01078 | Canola | nucleus | 61.24 | 53.78 |
| Zm00001d029305_P001 | Maize | nucleus | 41.15 | 52.44 |
| AT3G13570.1 | Thale cress | nucleus | 64.11 | 51.15 |
| Zm00001d010881_P001 | Maize | nucleus | 44.02 | 50.27 |
| PGSC0003DMT400010908 | Potato | nucleus | 64.11 | 47.86 |
| AT1G55310.3 | Thale cress | nucleus | 65.07 | 45.48 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 57.42 | 41.96 |
| Zm00001d005739_P004 | Maize | cytosol | 20.57 | 39.09 |
| Zm00001d015189_P001 | Maize | nucleus | 31.58 | 37.5 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 49.76 | 36.11 |
| Zm00001d043759_P001 | Maize | cytosol | 26.32 | 35.71 |
| Zm00001d012570_P002 | Maize | extracellular | 27.27 | 34.97 |
| Zm00001d029256_P002 | Maize | nucleus | 39.71 | 33.88 |
| Zm00001d006906_P010 | Maize | mitochondrion | 32.54 | 26.98 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 27.75 | 26.85 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 47.37 | 26.83 |
| Zm00001d022189_P002 | Maize | nucleus | 32.06 | 26.38 |
| Zm00001d010176_P001 | Maize | cytosol | 13.88 | 25.44 |
| Zm00001d004722_P001 | Maize | cytosol | 11.0 | 21.7 |
| Zm00001d052803_P004 | Maize | nucleus | 30.14 | 20.93 |
| Zm00001d031269_P002 | Maize | nucleus | 29.67 | 18.02 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 25.84 | 12.5 |
Protein Annotations
| EntrezGene:100285628 | MapMan:16.4.6.2 | Gene3D:3.30.70.330 | UniProt:B4F8E1 | EMBL:BT033379 | EMBL:BT036485 |
| EMBL:BT039129 | EMBL:BT055703 | EMBL:BT069684 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EMBL:KC425035 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM59933.1 |
| ProteinID:ONM59934.1 | ProteinID:ONM59935.1 | ProteinID:ONM59937.1 | ProteinID:ONM59938.1 | ProteinID:ONM59939.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00017B601B | EnsemblPlantsGene:Zm00001d022243 | EnsemblPlants:Zm00001d022243_P002 | EnsemblPlants:Zm00001d022243_T002 | SEG:seg |
Description
Serine/arginine-rich SC35-like splicing factor SCL33
Coordinates
chr7:+:173492467..173495695
Molecular Weight (calculated)
24589.6 Da
IEP (calculated)
11.177
GRAVY (calculated)
-1.474
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGYSYSPS PPRGYRRRAR SPSPHDHYGG RGRDLPTSLL VRNLRRDCRP EDLRRPFGQF GRVKDIYLPR DYYTGDPRGF GFVQYYDPAD AADAKYYMDG
101: QVVLGRQITV VFAEENRKKP QEMRARDRVR GHSYDDRRYS RSRSPRYYRG RSPSRSQSYS RSPPQNPRHR LRERSYSGSP VDSRSRSGSP YEDGYRKSSR
201: RERSLSVSG
101: QVVLGRQITV VFAEENRKKP QEMRARDRVR GHSYDDRRYS RSRSPRYYRG RSPSRSQSYS RSPPQNPRHR LRERSYSGSP VDSRSRSGSP YEDGYRKSSR
201: RERSLSVSG
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.