Factsheet for Zm00001d052803_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25727	Sorghum	nucleus	74.09	81.69
Os08t0486200-02	Rice	nucleus	69.1	71.97
GSMUA_Achr2P00600_001	Banana	nucleus	53.82	65.59
Zm00001d031269_P002	Maize	nucleus	74.42	65.12
GSMUA_Achr5P05380_001	Banana	nucleus	53.82	63.53
Zm00001d006906_P010	Maize	mitochondrion	48.84	58.33
Zm00001d022189_P002	Maize	nucleus	46.51	55.12
Zm00001d029305_P001	Maize	nucleus	17.28	31.71
Zm00001d029629_P001	Maize	nucleus	4.65	31.11
Zm00001d022243_P002	Maize	nucleus	20.93	30.14
Zm00001d047401_P001	Maize	nucleus	20.27	28.24
Zm00001d012570_P002	Maize	extracellular	15.28	28.22
Zm00001d019443_P002	Maize	nucleus	9.63	27.36
Zm00001d005285_P001	Maize	nucleus	12.96	27.27
Zm00001d004470_P001	Maize	nucleus	9.63	26.13
Zm00001d048609_P001	Maize	nucleus, plastid	23.26	24.31
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	33.89	23.61
Zm00001d004722_P001	Maize	cytosol	8.31	23.58
Zm00001d016504_P001	Maize	nucleus	5.65	22.67
Zm00001d029256_P002	Maize	nucleus	17.94	22.04
Zm00001d010176_P001	Maize	cytosol	7.97	21.05
Zm00001d010881_P001	Maize	nucleus	12.29	20.22
Zm00001d030739_P002	Maize	mitochondrion, nucleus, plastid	23.92	19.51
Zm00001d005739_P004	Maize	cytosol	6.98	19.09
Zm00001d015189_P001	Maize	nucleus	10.96	18.75
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	12.96	18.06
Zm00001d043759_P001	Maize	cytosol	8.31	16.23

Protein Annotations

EntrezGene:100272438	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6QK58	ProteinID:AQK58118.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004DEC65A	EnsemblPlantsGene:Zm00001d052803	EnsemblPlants:Zm00001d052803_P004	EnsemblPlants:Zm00001d052803_T004
SEG:seg	:	:	:	:	:

Description

Serine/arginine-rich splicing factor SC35

Coordinates

chr4:-:201411134..201419263

Molecular Weight (calculated)

34073.0 Da

IEP (calculated)

11.982

GRAVY (calculated)

-1.146

Length

301 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIRDTFSLLV LNISFREGDL TLAPPAPPTL PTLSLPLSLI ASFSYPSPPR FTGTTADDLF PLFERYGKVV DVFIPRDRRT GDSRGFAFVR
101: YKYADEAQKA IDRLDGRDVD GRNIMVQFAK YGPNAEPIRK GRVKEGVEKS QDRSRSRSPR PRHRDRDHRS QSRSRSRERH VRDRDRGYRR RSRSRSRSLS
201: SSPDNRSHHR ARDDDKRKSM SKSRSRSRST SRSRSYYSAS PARHSASPRK SPPPQRSPTP AKHANGKVAP LSRCVSPLPK RATSRSPGSD GKAIHVRSKA
301: C

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.