Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39239 | Sorghum | nucleus | 26.39 | 48.31 |
| HORVU2Hr1G029630.1 | Barley | plastid | 13.66 | 43.38 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 24.54 | 41.57 |
| Zm00001d006906_P010 | Maize | mitochondrion | 23.84 | 40.87 |
| GSMUA_Achr10P... | Banana | nucleus | 21.99 | 40.08 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 23.84 | 40.08 |
| Zm00001d022189_P002 | Maize | nucleus | 23.38 | 39.76 |
| PGSC0003DMT400032709 | Potato | nucleus | 23.15 | 39.37 |
| Solyc01g105140.2.1 | Tomato | nucleus | 23.15 | 39.37 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 25.0 | 39.27 |
| PGSC0003DMT400045694 | Potato | nucleus | 23.38 | 39.15 |
| Solyc04g074040.2.1 | Tomato | nucleus | 23.15 | 38.76 |
| KRH58277 | Soybean | nucleus | 23.84 | 38.58 |
| KRH42160 | Soybean | nucleus | 23.61 | 38.2 |
| Os07t0623300-01 | Rice | nucleus | 24.31 | 38.18 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 23.84 | 37.87 |
| Bra024276.1-P | Field mustard | nucleus | 23.84 | 36.79 |
| Zm00001d052803_P004 | Maize | nucleus | 23.61 | 33.89 |
| Zm00001d029629_P001 | Maize | nucleus | 3.47 | 33.33 |
| AT5G64200.2 | Thale cress | nucleus | 23.15 | 33.0 |
| Zm00001d031269_P002 | Maize | nucleus | 22.69 | 28.49 |
| CDX84503 | Canola | nucleus | 17.59 | 28.04 |
| Zm00001d004470_P001 | Maize | nucleus | 7.18 | 27.93 |
| Zm00001d022243_P002 | Maize | nucleus | 12.5 | 25.84 |
| Zm00001d019443_P002 | Maize | nucleus | 6.02 | 24.53 |
| Zm00001d029305_P001 | Maize | nucleus | 9.26 | 24.39 |
| Zm00001d047401_P001 | Maize | nucleus | 12.04 | 24.07 |
| Zm00001d012570_P002 | Maize | extracellular | 7.87 | 20.86 |
| Zm00001d005285_P001 | Maize | nucleus | 6.71 | 20.28 |
| Zm00001d016504_P001 | Maize | nucleus | 3.47 | 20.0 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 11.81 | 17.71 |
| Zm00001d005739_P004 | Maize | cytosol | 4.4 | 17.27 |
| Zm00001d015189_P001 | Maize | nucleus | 6.94 | 17.05 |
| Zm00001d043759_P001 | Maize | cytosol | 5.79 | 16.23 |
| Zm00001d004722_P001 | Maize | cytosol | 3.94 | 16.04 |
| Zm00001d010881_P001 | Maize | nucleus | 6.71 | 15.85 |
| CDY43799 | Canola | vacuole | 11.57 | 15.48 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 12.27 | 14.36 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 7.18 | 14.35 |
| Zm00001d029256_P002 | Maize | nucleus | 8.1 | 14.29 |
| Zm00001d010176_P001 | Maize | cytosol | 3.24 | 12.28 |
Protein Annotations
| EntrezGene:100282036 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6K4S7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONL98604.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF40 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix |
| UniParc:UPI00084497A4 | EnsemblPlantsGene:Zm00001d029380 | EnsemblPlants:Zm00001d029380_P002 | EnsemblPlants:Zm00001d029380_T002 | SEG:seg | : |
Description
Splicing factor%2C arginine/serine-rich 2
Coordinates
chr1:-:68392424..68396618
Molecular Weight (calculated)
47434.3 Da
IEP (calculated)
5.425
GRAVY (calculated)
0.087
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFGRSGQP ENRESFSLLV LNVSFRTTAD DLFPLFDRYG KVLDIYIPRD HRTGDPRGFA FVRYNYEDEA QDAIDGLDGM RFDGRALMVQ FAKYGPNAEK
101: MWLAAATAAA AVVLRYYRTC LNHGDCARGQ NLPHVGLERG GCHAARRQAA TAGSAGVHDV EHLDADYRGL RDHTELLGRS VIKSELLVSS DAHRDVDAVQ
201: LEAIVVYKQV LRGCLDTTTL AGTCRTPWQG AAEMVQCGRV APDDGMSTLI GVELQKKIQS QGVVAEAAVQ DRAYSIQGPC KTVFYFIASL LECPNVLAIC
301: EGIERIIGIE TIEGEARAEV GSDMNRPGTE MVIIVAIGLT VLVLIMTGNV TDTVALLYLK APVIAEVVLL VGHLMKEYLA SPEMAALHVL EALDPELWLN
401: ITQLLLDSLR HLSSSHHLYF LTKMAFVLVQ VE
101: MWLAAATAAA AVVLRYYRTC LNHGDCARGQ NLPHVGLERG GCHAARRQAA TAGSAGVHDV EHLDADYRGL RDHTELLGRS VIKSELLVSS DAHRDVDAVQ
201: LEAIVVYKQV LRGCLDTTTL AGTCRTPWQG AAEMVQCGRV APDDGMSTLI GVELQKKIQS QGVVAEAAVQ DRAYSIQGPC KTVFYFIASL LECPNVLAIC
301: EGIERIIGIE TIEGEARAEV GSDMNRPGTE MVIIVAIGLT VLVLIMTGNV TDTVALLYLK APVIAEVVLL VGHLMKEYLA SPEMAALHVL EALDPELWLN
401: ITQLLLDSLR HLSSSHHLYF LTKMAFVLVQ VE
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.