Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21387 | Sorghum | nucleus | 72.78 | 49.43 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 49.44 | 33.46 |
| CDX80835 | Canola | nucleus | 46.67 | 31.7 |
| CDY11223 | Canola | nucleus | 46.11 | 31.56 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 48.33 | 31.3 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 48.33 | 30.31 |
| CDX79732 | Canola | nucleus | 48.89 | 30.03 |
| AT2G37340.1 | Thale cress | nucleus | 48.33 | 30.0 |
| PGSC0003DMT400060435 | Potato | nucleus | 50.0 | 30.0 |
| KRH67593 | Soybean | endoplasmic reticulum | 47.78 | 29.97 |
| KRG95876 | Soybean | nucleus | 47.78 | 29.97 |
| CDX78183 | Canola | nucleus | 46.67 | 29.68 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 47.22 | 29.62 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 46.67 | 29.58 |
| CDX73550 | Canola | nucleus | 46.67 | 29.58 |
| CDY07586 | Canola | mitochondrion, nucleus | 47.22 | 29.51 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 48.89 | 29.43 |
| GSMUA_Achr10P... | Banana | nucleus | 52.78 | 29.23 |
| CDY52755 | Canola | mitochondrion, nucleus | 47.22 | 29.21 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 47.22 | 29.21 |
| KRH67596 | Soybean | nucleus | 48.33 | 29.1 |
| KRG95883 | Soybean | nucleus | 47.22 | 28.62 |
| Bra007004.1-P | Field mustard | nucleus | 46.67 | 28.28 |
| Solyc09g005980.2.1 | Tomato | nucleus | 48.89 | 27.94 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 52.22 | 27.89 |
| CDY46773 | Canola | nucleus | 48.89 | 27.85 |
| Bra023114.1-P | Field mustard | nucleus | 48.89 | 27.85 |
| PGSC0003DMT400061471 | Potato | nucleus | 48.33 | 27.62 |
| KRH58317 | Soybean | nucleus | 33.33 | 27.4 |
| Bra005756.1-P | Field mustard | nucleus | 34.44 | 26.96 |
| Solyc05g054920.2.1 | Tomato | nucleus | 50.0 | 26.71 |
| Zm00001d011004_P008 | Maize | nucleus | 48.89 | 26.04 |
| Os05t0162600-01 | Rice | nucleus | 47.22 | 25.15 |
| Zm00001d011005_P005 | Maize | nucleus | 48.89 | 24.93 |
| KRH42195 | Soybean | endoplasmic reticulum | 37.78 | 24.73 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 48.33 | 23.45 |
| Zm00001d041673_P001 | Maize | cytosol | 12.78 | 20.18 |
| Zm00001d047498_P003 | Maize | nucleus | 26.11 | 16.49 |
| Zm00001d040672_P013 | Maize | nucleus | 26.11 | 16.04 |
| Zm00001d035551_P007 | Maize | nucleus | 30.0 | 13.78 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 25.56 | 13.29 |
| Zm00001d009821_P001 | Maize | plastid | 15.56 | 8.81 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A1D6LYS2 | ProteinID:AQK84268.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SUPFAM:SSF54928 |
| SUPFAM:SSF57756 | UniParc:UPI000843A548 | EnsemblPlantsGene:Zm00001d037543 | EnsemblPlants:Zm00001d037543_P001 | EnsemblPlants:Zm00001d037543_T001 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
Serine/arginine-rich splicing factor RS2Z32
Coordinates
chr6:+:128788528..128789977
Molecular Weight (calculated)
20293.8 Da
IEP (calculated)
8.746
GRAVY (calculated)
-0.877
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREFGFVEF TDPRDADDAR HDLDGRIFDG SHLIVEFARG AQRGPGGVPL DGKGPSFPGR CYNCGMDGHW VRDCKAGDWR DKCFRCGELG HIERNCKNSS
101: KDLKYFLEFP NYLACSFLFK YLHVFTVSRS HSPRNNSKAY GEELPSTRSG YSRGPRRSSP PMERAECNGG SPMRGEARGK
101: KDLKYFLEFP NYLACSFLFK YLHVFTVSRS HSPRNNSKAY GEELPSTRSG YSRGPRRSSP PMERAECNGG SPMRGEARGK
001: MKRDYAFVEF GDPRDADDAR HYLDGRDFDG SRITVEFSRG APRGSRDFDS RGPPPGAGRC FNCGVDGHWA RDCTAGDWKN KCYRCGERGH IERNCKNSPK
101: KLRRSGSYSR SPVRSRSPRR RRSPSRSLSR SRSYSRSRSP VRRRERSVEE RSRSPKRMDD SLSPRARDRS PVLDDEGSPK IIDGSPPPSP KLQKEVGSDR
201: DGGSPQDNGR NSVVSPVVGA GGDSSKEDRS PVDDDYEPNR TSPRGSESP
101: KLRRSGSYSR SPVRSRSPRR RRSPSRSLSR SRSYSRSRSP VRRRERSVEE RSRSPKRMDD SLSPRARDRS PVLDDEGSPK IIDGSPPPSP KLQKEVGSDR
201: DGGSPQDNGR NSVVSPVVGA GGDSSKEDRS PVDDDYEPNR TSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.