Factsheet for Zm00001d052062_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005361_P007
Zm00001d009821_P001
Zm00001d011004_P008
Zm00001d011005_P005
Zm00001d011258_P001
Zm00001d014343_P002
Zm00001d017096_P005
Zm00001d024675_P001
Zm00001d035551_P007
Zm00001d035552_P001
Zm00001d037543_P001
Zm00001d037925_P006
Zm00001d040672_P013
Zm00001d041673_P001
Zm00001d044338_P003
Zm00001d047498_P003
Zm00001d049346_P001
Zm00001d050970_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Zm00001d009821_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d037925_P006	AT1G09140.1	21798944
AT2G24590.1	Zm00001d040672_P013	AT1G09140.1	21798944
AT2G24590.1	Zm00001d041673_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d047498_P003	AT1G09140.1	21798944
AT2G24590.1	Zm00001d049346_P001	AT3G21215.1	21798944
AT2G24590.1	Zm00001d011258_P001	AT4G32660.1	21798944
AT2G24590.1	Zm00001d044338_P003	AT4G32660.1	21798944
AT2G24590.1	Zm00001d024675_P001	AT5G54580.1	21798944
AT4G31580.1	Zm00001d011004_P008	AT2G37340.1	18674533
AT4G31580.1	Zm00001d011005_P005	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035551_P007	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035552_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d037543_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	10593939
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	9761791
AT4G31580.1	Zm00001d005361_P007	AT4G24740.1	10593939
AT4G31580.1	Zm00001d017096_P005	AT4G24740.1	10593939
AT4G31580.1	Zm00001d050970_P003	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07659	Sorghum	nucleus	74.16	80.98
Os02t0789400-01	Rice	nucleus	67.42	64.86
GSMUA_Achr8P24800_001	Banana	nucleus	65.17	63.74
GSMUA_Achr4P09230_001	Banana	nucleus	64.04	63.33
TraesCS6B01G382600.1	Wheat	nucleus	66.29	60.82
TraesCS6D01G332000.1	Wheat	nucleus	65.73	60.31
TraesCS6A01G349500.1	Wheat	nucleus	65.73	60.31
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	46.63	54.61
VIT_04s0069g00800.t01	Wine grape	nucleus	55.06	54.14
PGSC0003DMT400067677	Potato	nucleus	55.62	54.1
Zm00001d045330_P001	Maize	nucleus	46.07	53.95
PGSC0003DMT400075974	Potato	nucleus	54.49	53.01
KRH04931	Soybean	nucleus	51.69	51.69
KRH16160	Soybean	endoplasmic reticulum	51.69	51.69
Zm00001d045076_P001	Maize	nucleus	60.67	51.67
CDX72313	Canola	nucleus	55.62	50.25
CDY13444	Canola	nucleus	55.62	49.75
Bra023994.1-P	Field mustard	nucleus	55.62	49.75
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	64.04	49.14
AT4G31580.1	Thale cress	nucleus	55.06	49.0
HORVU6Hr1G083840.4	Barley	plastid	65.73	47.56
AT2G24590.1	Thale cress	nucleus	52.25	47.45
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	10.11	46.15
CDY45585	Canola	nucleus	50.0	45.41
CDY20328	Canola	nucleus	50.0	45.41
Bra032082.1-P	Field mustard	nucleus	50.56	44.34
Zm00001d017177_P007	Maize	nucleus	62.36	43.87
Solyc08g069120.2.1	Tomato	nucleus	56.18	41.15
Zm00001d051052_P001	Maize	nucleus	62.92	40.43
Zm00001d028789_P001	Maize	cytosol	49.44	39.64

Protein Annotations

EntrezGene:100280612	MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	ProteinID:AQK55935.1	ProteinID:AQK55936.1
ProteinID:AQK55937.1	ProteinID:AQK55939.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:K7U5B6	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SUPFAM:SSF54928	SUPFAM:SSF57756	SignalP:SignalP-noTM
UniParc:UPI000220BD97	EnsemblPlantsGene:Zm00001d052062	EnsemblPlants:Zm00001d052062_P002	EnsemblPlants:Zm00001d052062_T002	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

Splicing factor%2C arginine/serine-rich 7%3B Splicing factor%2C arginine/serine-rich 7 isoform 1%3B Splicing factor%2C arginine/serine-rich 7 isoform 2

Coordinates

chr4:+:178173541..178177968

Molecular Weight (calculated)

20514.3 Da

IEP (calculated)

11.247

GRAVY (calculated)

-0.967

Length

178 amino acids

Sequence
(BLAST)

001: MKVCMCIFML DLARWRGFIC YISLRLLSLS DEHLVQSTNC CSQCSVWVAR KPPGFAFIDF DDRRDAEDAI RDLDGKNGWK VELSRSTNGR GSRDRHGGSE
101: SKCYECGETG HFARECRLRI GSGGLGSGRR RSRSRSRSRS PRYRRSPSYN RRSYSPRYRS PRRRTPSPAR GRSYSRSP

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.