Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 87.98 | 88.95 |
| PGSC0003DMT400075974 | Potato | nucleus | 88.52 | 88.52 |
| KRH16160 | Soybean | endoplasmic reticulum | 83.61 | 85.96 |
| KRH04931 | Soybean | nucleus | 83.06 | 85.39 |
| EES07659 | Sorghum | nucleus | 66.67 | 74.85 |
| CDY20328 | Canola | nucleus | 79.78 | 74.49 |
| CDY45585 | Canola | nucleus | 79.78 | 74.49 |
| AT4G31580.1 | Thale cress | nucleus | 79.78 | 73.0 |
| AT2G24590.1 | Thale cress | nucleus | 77.6 | 72.45 |
| Bra023994.1-P | Field mustard | nucleus | 78.69 | 72.36 |
| CDY13444 | Canola | nucleus | 78.69 | 72.36 |
| CDX72313 | Canola | nucleus | 77.6 | 72.08 |
| Bra032082.1-P | Field mustard | nucleus | 79.78 | 71.92 |
| Os06t0187900-02 | Rice | nucleus | 71.58 | 70.81 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 68.85 | 70.0 |
| TraesCSU01G104300.1 | Wheat | nucleus | 69.4 | 69.78 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 69.4 | 69.78 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 69.4 | 69.4 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 68.85 | 69.23 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 72.13 | 68.04 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 72.13 | 68.04 |
| EER87987 | Sorghum | nucleus | 68.85 | 67.74 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 71.58 | 67.53 |
| Os02t0789400-01 | Rice | nucleus | 67.76 | 67.03 |
| Os02t0610600-01 | Rice | nucleus | 68.85 | 63.0 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 46.45 | 55.92 |
| Zm00001d052062_P002 | Maize | extracellular | 54.1 | 55.62 |
| Zm00001d045330_P001 | Maize | nucleus | 45.9 | 55.26 |
| HORVU6Hr1G083840.4 | Barley | plastid | 72.13 | 53.66 |
| Zm00001d045076_P001 | Maize | nucleus | 59.02 | 51.67 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 67.76 | 50.2 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 68.31 | 50.2 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 60.66 | 47.84 |
| Zm00001d017177_P007 | Maize | nucleus | 64.48 | 46.64 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 67.76 | 46.1 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 69.95 | 44.44 |
| Zm00001d028789_P001 | Maize | cytosol | 52.46 | 43.24 |
| Zm00001d051052_P001 | Maize | nucleus | 64.48 | 42.6 |
| OQU85289 | Sorghum | plastid | 66.67 | 38.49 |
Protein Annotations
| EntrezGene:102582109 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 |
| UniProt:M1CHP4 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | EnsemblPlantsGene:PGSC0003DMG400026319 | PGSC:PGSC0003DMG400026319 |
| EnsemblPlants:PGSC0003DMT400067677 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI00029492EE |
| RefSeq:XP_006357055.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026319]
Coordinates
chr8:-:2192986..2197625
Molecular Weight (calculated)
20825.2 Da
IEP (calculated)
11.716
GRAVY (calculated)
-1.331
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVTERELED EFRVFGVIRS VWVARRPPGY AFIDFDDRRD AQDAIRDLDG KNGWRVELSH NSRGERGGGR GGGRGRSGGS DLKCYECGES
101: GHFARECRVR GGPGPGKRRS RSPPRYRRSP SYGRRSYSPR GRSPKRRSVS PRGRSYSRSP YRGRDEVPYS NGNGVRDRIR SRS
101: GHFARECRVR GGPGPGKRRS RSPPRYRRSP SYGRRSYSPR GRSPKRRSVS PRGRSYSRSP YRGRDEVPYS NGNGVRDRIR SRS
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
Arabidopsis Description
RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.