CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92904
KRG94066
KRG95876
KRG95883
KRG99320
KRH03872
KRH25927
KRH28659
KRH42195
KRH44644
KRH45698
KRH47009
KRH52649
KRH54290
KRH55574
KRH57157
KRH58317
KRH61991
KRH63654
KRH67593
KRH67596
KRH69931
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	KRG92904	AT1G09140.1	21798944
AT2G24590.1	KRH44644	AT3G21215.1	21798944
AT2G24590.1	KRH47009	AT3G21215.1	21798944
AT2G24590.1	KRG94066	AT4G32660.1	21798944
AT2G24590.1	KRH52649	AT4G32660.1	21798944
AT2G24590.1	KRH61991	AT4G32660.1	21798944
AT2G24590.1	KRH25927	AT5G54580.1	21798944
AT2G24590.1	KRH55574	AT5G54580.1	21798944
AT4G31580.1	KRG99320	AT1G23860.1	18674533
AT4G31580.1	KRH45698	AT1G23860.1	18674533
AT4G31580.1	KRG95876	AT2G37340.1	18674533
AT4G31580.1	KRG95883	AT2G37340.1	18674533
AT4G31580.1	KRH42195	AT2G37340.1	18674533
AT4G31580.1	KRH58317	AT2G37340.1	18674533
AT4G31580.1	KRH67593	AT2G37340.1	18674533
AT4G31580.1	KRH67596	AT2G37340.1	18674533
AT4G31580.1	KRH28659	AT3G50670.1	10593939
AT4G31580.1	KRH69931	AT3G50670.1	10593939
AT4G31580.1	KRH76798	AT3G50670.1	10593939
AT4G31580.1	KRH28659	AT3G50670.1	9761791
AT4G31580.1	KRH69931	AT3G50670.1	9761791
AT4G31580.1	KRH76798	AT3G50670.1	9761791
AT4G31580.1	KRH03872	AT4G24740.1	10593939
AT4G31580.1	KRH54290	AT4G24740.1	10593939
AT4G31580.1	KRH57157	AT4G24740.1	10593939
AT4G31580.1	KRH63654	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04931	Soybean	nucleus	98.31	98.31
VIT_04s0069g00800.t01	Wine grape	nucleus	92.13	90.61
PGSC0003DMT400075974	Potato	nucleus	86.52	84.15
PGSC0003DMT400067677	Potato	nucleus	85.96	83.61
KRG99320	Soybean	nucleus	74.72	75.14
AT4G31580.1	Thale cress	nucleus	82.02	73.0
CDY45585	Canola	nucleus	80.34	72.96
CDY20328	Canola	nucleus	80.34	72.96
CDY13444	Canola	nucleus	80.9	72.36
Bra023994.1-P	Field mustard	nucleus	80.9	72.36
CDX72313	Canola	nucleus	79.78	72.08
KRH45698	Soybean	nucleus	74.72	71.51
Bra032082.1-P	Field mustard	nucleus	80.9	70.94
AT2G24590.1	Thale cress	nucleus	78.09	70.92
EES07659	Sorghum	nucleus	64.04	69.94
Os06t0187900-02	Rice	nucleus	69.66	67.03
GSMUA_Achr4P09230_001	Banana	nucleus	67.42	66.67
GSMUA_Achr8P24800_001	Banana	nucleus	67.98	66.48
TraesCS6B01G382600.1	Wheat	nucleus	70.79	64.95
TraesCS6A01G349500.1	Wheat	nucleus	70.79	64.95
TraesCS6D01G332000.1	Wheat	nucleus	70.22	64.43
EER87987	Sorghum	nucleus	66.85	63.98
TraesCSU01G104300.1	Wheat	nucleus	65.17	63.74
TraesCS7A01G152800.1	Wheat	nucleus	65.17	63.74
TraesCS7B01G056600.2	Wheat	nucleus	65.17	63.39
Solyc08g069120.2.1	Tomato	nucleus	86.52	63.37
Os02t0789400-01	Rice	nucleus	64.61	62.16
Os02t0610600-01	Rice	nucleus	66.29	59.0
Zm00001d052062_P002	Maize	extracellular	51.69	51.69
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	43.82	51.32
HORVU6Hr1G083840.4	Barley	plastid	70.79	51.22
Zm00001d045330_P001	Maize	nucleus	43.26	50.66
Zm00001d045076_P001	Maize	nucleus	56.18	47.85
TraesCS6B01G248500.1	Wheat	nucleus	66.85	47.79
TraesCS6A01G219000.2	Wheat	nucleus	66.29	47.77
Zm00001d017177_P007	Maize	nucleus	66.29	46.64
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	58.43	44.83
TraesCS6D01G202100.1	Wheat	nucleus	65.73	43.49
Zm00001d051052_P001	Maize	nucleus	65.17	41.88
HORVU7Hr1G031320.1	Barley	nucleus	65.73	40.62
Zm00001d028789_P001	Maize	cytosol	49.44	39.64
OQU85289	Sorghum	plastid	67.98	38.17

Protein Annotations

EntrezGene:100796961	MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02008797	EnsemblPlantsGene:GLYMA_14G136700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	UniProt:I1M9U2
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRH16160	ProteinID:KRH16160	ProteinID:KRH16160.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0001D83CC8	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:-:24186454..24190480

Molecular Weight (calculated)

20395.8 Da

IEP (calculated)

11.849

GRAVY (calculated)

-1.319

Length

178 amino acids

Sequence
(BLAST)

001: MSRVYVGNLD SRVTERDLED EFRVFGVIRS VWVARRPPGY AFIDFDDRRD AQDAIRELDG KNGWRVELSH NSRGGGGGRG GRSGGSDLKC YECGEPGHFA
101: RECRMRGGSG RRRSRSPPRF RRSPSYGRRS YSPRGRSPRH RSLSPRGRSY SRSPPYRGRE EVPYANGNGL RERRRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.