CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93223
KRG96443
KRG99320
KRH01744
KRH02172
KRH04931
KRH13056
KRH15102
KRH16160
KRH28659
KRH38014
KRH42160
KRH45698
KRH46935
KRH50944
KRH58277
KRH68188
KRH69931
KRH73034
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	KRG96443	AT1G02840.1	18674533
AT2G37340.1	KRH68188	AT1G02840.1	18674533
AT2G37340.1	KRG99320	AT1G23860.1	18674533
AT2G37340.1	KRH45698	AT1G23860.1	18674533
AT2G37340.1	KRG93223	AT1G53720.1	16497658
AT2G37340.1	KRH13056	AT1G53720.1	16497658
AT2G37340.1	KRH01744	AT2G43370.1	15987817
AT2G37340.1	KRH46935	AT2G43370.1	15987817
AT2G37340.1	KRH38014	AT3G13570.1	18674533
AT2G37340.1	KRH28659	AT3G50670.1	18674533
AT2G37340.1	KRH69931	AT3G50670.1	18674533
AT2G37340.1	KRH76798	AT3G50670.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	18674533
AT2G37340.1	KRH73034	AT3G55460.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	21798944
AT2G37340.1	KRH73034	AT3G55460.1	21798944
AT2G37340.1	KRH04931	AT4G31580.1	18674533
AT2G37340.1	KRH16160	AT4G31580.1	18674533
AT2G37340.1	KRH02172	AT5G18810.1	18674533
AT2G37340.1	KRH50944	AT5G18810.1	18674533
AT2G37340.1	KRH42160	AT5G64200.2	18674533
AT2G37340.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95883	Soybean	nucleus	91.3	91.92
KRH67593	Soybean	endoplasmic reticulum	81.94	85.37
KRG95876	Soybean	nucleus	81.61	85.02
KRH42195	Soybean	endoplasmic reticulum	65.55	71.27
KRH58317	Soybean	nucleus	50.17	68.49
CDX73550	Canola	nucleus	63.55	66.9
CDX78183	Canola	nucleus	63.21	66.78
AT3G53500.2	Thale cress	mitochondrion, nucleus	62.21	65.49
VIT_08s0040g02860.t01	Wine grape	nucleus	57.86	65.04
CDX79732	Canola	nucleus	63.21	64.51
CDY07586	Canola	mitochondrion, nucleus	61.87	64.24
AT2G37340.1	Thale cress	nucleus	61.87	63.79
CDX80835	Canola	nucleus	56.52	63.77
Bra007004.1-P	Field mustard	nucleus	63.21	63.64
Bra003139.1-P	Field mustard	mitochondrion, nucleus	61.87	63.57
CDY52755	Canola	mitochondrion, nucleus	61.87	63.57
KXG21152	Sorghum	nucleus	65.89	63.14
CDY11223	Canola	nucleus	55.52	63.12
EES00292	Sorghum	nucleus	61.2	61.82
Bra005756.1-P	Field mustard	nucleus	46.49	60.43
Bra023114.1-P	Field mustard	nucleus	63.55	60.13
CDY46773	Canola	nucleus	63.21	59.81
Os05t0120100-01	Rice	mitochondrion, nucleus	64.55	59.75
Solyc09g005980.2.1	Tomato	nucleus	62.88	59.68
PGSC0003DMT400061471	Potato	nucleus	62.54	59.37
GSMUA_Achr10P...	Banana	nucleus	63.55	58.46
Os01t0155600-01	Rice	nucleus	63.21	58.33
Os03t0285900-01	Rice	nucleus	63.88	57.88
GSMUA_Achr6P15450_001	Banana	nucleus	64.88	57.57
TraesCS1B01G065900.2	Wheat	nucleus	65.55	57.48
TraesCS1D01G051900.1	Wheat	nucleus	65.22	57.02
TraesCS1A01G049700.1	Wheat	nucleus	64.88	56.73
EES18924	Sorghum	nucleus	63.88	56.01
TraesCS3B01G151100.1	Wheat	nucleus	59.87	55.42
TraesCS1D01G111000.2	Wheat	nucleus	52.84	55.05
TraesCS1A01G108000.2	Wheat	nucleus	51.17	55.04
TraesCS3D01G134500.1	Wheat	nucleus	59.53	54.94
Zm00001d011004_P008	Maize	nucleus	61.87	54.73
TraesCS1B01G130200.3	Wheat	nucleus	52.51	54.7
HORVU1Hr1G024060.21	Barley	nucleus	54.52	54.52
Zm00001d011005_P005	Maize	nucleus	64.21	54.39
TraesCS3A01G308000.1	Wheat	nucleus	59.87	53.75
HORVU1Hr1G009950.7	Barley	nucleus, plastid	64.21	52.17
KXG21387	Sorghum	nucleus	45.48	51.32
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	62.54	50.4
Zm00001d037543_P001	Maize	nucleus	29.1	48.33
OQU77498	Sorghum	nucleus	17.06	45.95
Os05t0162600-01	Rice	nucleus	47.16	41.72
Zm00001d035551_P007	Maize	nucleus	46.49	35.46
KRG96443	Soybean	nucleus	30.77	29.39
KRH75557	Soybean	cytosol	10.7	28.83
KRH64312	Soybean	nucleus	25.08	28.09
KRH53616	Soybean	nucleus	24.41	27.76
KXG21391	Sorghum	nucleus	35.79	26.75
KRH68188	Soybean	nucleus	26.42	26.42
KRG92904	Soybean	nucleus	23.75	25.72

Protein Annotations

EntrezGene:100813237	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02002069	EnsemblPlantsGene:GLYMA_03G175600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	UniProt:I1JPG4
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRH67596	ProteinID:KRH67596	ProteinID:KRH67596.1
ProteinID:KRH67597.1	ProteinID:KRH67598.1	ProteinID:KRH67599.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000233A919	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38891732..38895479

Molecular Weight (calculated)

34041.8 Da

IEP (calculated)

10.684

GRAVY (calculated)

-1.630

Length

299 amino acids

Sequence
(BLAST)

001: MPRYDDKYGN TRLYVGRLSS RTRSRDLERV FSRYGRVRGV DMKNDFAFVE FSDPRDADDA RYNLDGRDVE GSRIIVEFAK GGPRGSRDRE YMGRGPPPGS
101: GRCFNCGIDG HWARDCKAGD WKNKCYRCGE RGHIEKNCKN SPKKLSQRGR SLSRSPVRSR SPRRGRSRDR SYSRDHSYSR SRSPVRRERS PVSEDRSQSR
201: EPSKIRKHSA SPDQSSPRKR GDTSPGNDRL ATHQDGSDYS DGPRGKSRSP ASPARDRDEG GYDSPKANGH SRSPSRSPRD DDRSPIDEDD DNHRRSQSP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.