CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92904
KRG93223
KRG95876
KRG95883
KRG96443
KRG99320
KRH01744
KRH02172
KRH13056
KRH15102
KRH38014
KRH42160
KRH42195
KRH45698
KRH46935
KRH50944
KRH58277
KRH58317
KRH67593
KRH67596
KRH68188
KRH73034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18810.1	KRG96443	AT1G02840.1	18674533
AT5G18810.1	KRH68188	AT1G02840.1	18674533
AT5G18810.1	KRG92904	AT1G09140.1	18674533
AT5G18810.1	KRG99320	AT1G23860.1	18674533
AT5G18810.1	KRH45698	AT1G23860.1	18674533
AT5G18810.1	KRG93223	AT1G53720.1	16497658
AT5G18810.1	KRH13056	AT1G53720.1	16497658
AT5G18810.1	KRG95876	AT2G37340.1	18674533
AT5G18810.1	KRG95883	AT2G37340.1	18674533
AT5G18810.1	KRH42195	AT2G37340.1	18674533
AT5G18810.1	KRH58317	AT2G37340.1	18674533
AT5G18810.1	KRH67593	AT2G37340.1	18674533
AT5G18810.1	KRH67596	AT2G37340.1	18674533
AT5G18810.1	KRH01744	AT2G43370.1	15987817
AT5G18810.1	KRH46935	AT2G43370.1	15987817
AT5G18810.1	KRH38014	AT3G13570.1	18674533
AT5G18810.1	KRH15102	AT3G55460.1	18674533
AT5G18810.1	KRH73034	AT3G55460.1	18674533
AT5G18810.1	KRH02172	AT5G18810.1	18674533
AT5G18810.1	KRH50944	AT5G18810.1	18674533
AT5G18810.1	KRH42160	AT5G64200.2	18674533
AT5G18810.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50944	Soybean	nucleus	93.2	95.88
Solyc01g080660.2.1	Tomato	nucleus	46.4	69.88
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	29.2	68.22
GSMUA_Achr5P27460_001	Banana	nucleus	25.6	68.09
AT5G18810.1	Thale cress	nucleus	61.2	64.83
VIT_14s0030g00480.t01	Wine grape	nucleus	74.4	64.81
GSMUA_Achr5P27470_001	Banana	nucleus	30.0	62.5
PGSC0003DMT400016115	Potato	nucleus	61.2	57.52
Os03t0363800-01	Rice	nucleus	54.8	56.38
KXG39307	Sorghum	nucleus	52.8	54.77
TraesCS4B01G156200.1	Wheat	nucleus	51.6	53.97
TraesCS4D01G162900.1	Wheat	nucleus	50.4	52.94
HORVU4Hr1G045510.3	Barley	nucleus	50.0	52.3
TraesCS4A01G141800.2	Wheat	nucleus	51.6	51.6
Zm00001d029256_P002	Maize	nucleus	49.2	50.2
KRH16958	Soybean	nucleus	45.6	45.78
KRH72576	Soybean	nucleus	45.6	45.06
KRH15102	Soybean	nucleus	43.6	40.22
HORVU7Hr1G080760.3	Barley	mitochondrion	26.4	39.29
KRH73034	Soybean	nucleus	43.2	39.13
KRH38014	Soybean	endoplasmic reticulum, nucleus	39.6	34.62
HORVU1Hr1G043200.4	Barley	mitochondrion, nucleus	25.2	33.87
GSMUA_Achr8P00220_001	Banana	extracellular	26.8	30.32
KRH42160	Soybean	nucleus	32.0	29.96
KRH58277	Soybean	nucleus	31.6	29.59

Protein Annotations

EntrezGene:100788749	MapMan:16.4.6.2	Gene3D:3.30.70.330	EMBL:ACUP02010298	EnsemblPlantsGene:GLYMA_17G021700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0016607	UniProt:I1MRC7	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH02172	ProteinID:KRH02172	ProteinID:KRH02172.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002953140	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1584035..1589614

Molecular Weight (calculated)

29286.9 Da

IEP (calculated)

11.697

GRAVY (calculated)

-1.703

Length

250 amino acids

Sequence
(BLAST)

001: MGRYRSRSRS YSPRRRSRSP PAPRGRNRYV DDRYGDSRSY RDRRSPLPSG LLVRNLPLDA RPEDLRIPFE RYGPVKDVYL PKNYYTGEPR GFGFVKYRYG
101: EDAAEAKQHL NHTIIGGREI RIVFAEENRK TPQEMRVNTR GSGRYGGGRR RNHTRSPRRR YRSYSRSPSP ARDDSRDGRG RDDYYSPERS RSYSRSLSPS
201: GGKDYRKSPR LRENGRSPND KKDQTPSRSE SPRGNDRSPS RSRSRSYSPR

Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)

001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR

Arabidopsis Description

SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.