Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15102 | Soybean | nucleus | 93.84 | 95.57 |
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 34.78 | 68.09 |
| Os12t0572400-01 | Rice | nucleus | 61.96 | 65.02 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 63.04 | 64.68 |
| EES16196 | Sorghum | nucleus | 60.87 | 64.12 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 60.87 | 64.12 |
| CDY02941 | Canola | nucleus | 64.49 | 64.03 |
| CDX76092 | Canola | plastid | 64.49 | 63.12 |
| Os02t0252100-02 | Rice | nucleus | 60.51 | 63.02 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 58.7 | 60.45 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 49.64 | 60.35 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 64.49 | 60.34 |
| EES10309 | Sorghum | nucleus | 58.7 | 60.0 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 57.61 | 59.77 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 57.97 | 59.48 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 49.28 | 59.13 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 56.88 | 59.02 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 56.88 | 57.72 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 34.06 | 56.29 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 59.42 | 55.41 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 59.42 | 55.41 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 70.65 | 55.24 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 59.06 | 55.07 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 51.45 | 54.2 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 56.52 | 54.17 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 59.06 | 54.15 |
| KRH16958 | Soybean | nucleus | 41.67 | 46.18 |
| KRH72576 | Soybean | nucleus | 41.67 | 45.45 |
| KRH02172 | Soybean | nucleus | 39.13 | 43.2 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 57.25 | 42.82 |
| KRH50944 | Soybean | nucleus | 37.32 | 42.39 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 35.14 | 33.92 |
| KRH58277 | Soybean | nucleus | 28.62 | 29.59 |
| KRH42160 | Soybean | nucleus | 28.62 | 29.59 |
| Os11t0704700-01 | Rice | nucleus | 44.93 | 24.27 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 49.64 | 15.05 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 49.28 | 14.99 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 37.32 | 12.97 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 48.19 | 12.16 |
Protein Annotations
| EntrezGene:100804294 | MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EMBL:ACUP02001263 | EnsemblPlantsGene:GLYMA_02G247800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JHZ0 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH73034 | ProteinID:KRH73034 | ProteinID:KRH73034.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233792C | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:43539107..43542762
Molecular Weight (calculated)
31089.0 Da
IEP (calculated)
11.700
GRAVY (calculated)
-1.417
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRNSPAYYS PPRRGYGGGG RGGGGGGGGG GSGRRGFGGG RRRDSNGSLL VRNIPLDCRP EELRVPFERF GPVRDVYIPK DYYSGEPRGF AFVQFVDPYD
101: ASEAQYHMNR QIFAGREISV VVAEETRKRP EEMRHRTSRL RGPAGYGGQR SSRYGRSRSR SVTRSRSPPY HSGSRNRYRS RSYSPAPRRQ SDYSVSPRRQ
201: AEHPRSPRGP PRERDGEQKR RSYSPAYGNG IEQNQSNGYA EKSMYKSDAD RGQWKSSRSP PGSRSRSAEL SPRRGR
101: ASEAQYHMNR QIFAGREISV VVAEETRKRP EEMRHRTSRL RGPAGYGGQR SSRYGRSRSR SVTRSRSPPY HSGSRNRYRS RSYSPAPRRQ SDYSVSPRRQ
201: AEHPRSPRGP PRERDGEQKR RSYSPAYGNG IEQNQSNGYA EKSMYKSDAD RGQWKSSRSP PGSRSRSAEL SPRRGR
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.