Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 71.26 | 84.4 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 74.85 | 55.07 |
| HORVU7Hr1G080760.3 | Barley | mitochondrion | 53.29 | 52.98 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 71.86 | 52.17 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 78.44 | 49.25 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 77.25 | 48.5 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 76.65 | 47.58 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 77.25 | 47.43 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 73.65 | 46.95 |
| Os02t0252100-02 | Rice | nucleus | 68.86 | 43.4 |
| HORVU1Hr1G043200.4 | Barley | mitochondrion, nucleus | 46.71 | 41.94 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 66.47 | 41.42 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 64.67 | 40.15 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 68.26 | 37.87 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 56.29 | 35.88 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 43.11 | 34.62 |
| KRH15102 | Soybean | nucleus | 55.69 | 34.32 |
| KRH73034 | Soybean | nucleus | 56.29 | 34.06 |
| CDY02941 | Canola | nucleus | 56.29 | 33.81 |
| CDX76092 | Canola | plastid | 56.29 | 33.33 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 56.29 | 31.86 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 64.07 | 30.31 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 24.55 | 29.5 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 38.32 | 26.78 |
| HORVU2Hr1G029630.1 | Barley | plastid | 19.76 | 24.26 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 48.5 | 7.4 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G073490.2 | EnsemblPlantsGene:HORVU2Hr1G073490 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B478353 | UniProt:A0A287IFZ3 | MapMan:16.4.6.2 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:530596144..530598075
Molecular Weight (calculated)
19397.9 Da
IEP (calculated)
9.284
GRAVY (calculated)
-0.892
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: ASNEEGEDRV GLDIIEKFRM RKAMRRYNPQ YRSPPRRGYG GRGRSPPRRG YGGWREQGSG SLLVRNIPLS CRPEDLRVPF ERFGPVQDVY LPKDYYTREP
101: RGFAFVEFVD PYDASDAQYH LNHTLFFGRE ITVVVVAESQ KRPDDMCNRA RVRGYSGELD ERIDMVG
101: RGFAFVEFVD PYDASDAQYH LNHTLFFGRE ITVVVVAESQ KRPDDMCNRA RVRGYSGELD ERIDMVG
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.