Factsheet for HORVU5Hr1G073680.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G029030.3
HORVU4Hr1G038850.14
HORVU5Hr1G089980.2
HORVU5Hr1G090000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	HORVU4Hr1G029030.3	AT4G36690.1	21798944
AT5G42820.1	HORVU4Hr1G038850.14	AT4G36690.1	21798944
AT5G42820.1	HORVU5Hr1G089980.2	AT4G36690.1	21798944
AT5G42820.1	HORVU5Hr1G090000.2	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G275300.1	Wheat	nucleus	97.45	98.08
TraesCS5A01G267500.1	Wheat	nucleus	98.09	97.78
KXG35922	Sorghum	nucleus	74.84	82.17
Zm00001d020954_P001	Maize	nucleus	74.2	81.18
Os09t0491756-01	Rice	nucleus	72.93	78.97
GSMUA_Achr11P...	Banana	cytosol	49.36	75.24
GSMUA_Achr9P12340_001	Banana	cytosol	58.6	72.73
VIT_18s0122g00480.t01	Wine grape	nucleus	62.1	71.69
KRG89181	Soybean	nucleus	61.15	71.64
KRH49506	Soybean	nucleus	61.47	71.22
HORVU5Hr1G073660.1	Barley	cytosol	41.72	69.31
HORVU3Hr1G061060.2	Barley	nucleus	61.47	68.68
CDX95151	Canola	nucleus	60.19	67.26
AT5G42820.1	Thale cress	nucleus	60.51	67.14
CDY52374	Canola	nucleus	60.83	66.78
Bra027459.1-P	Field mustard	nucleus	60.19	64.95
AT1G27650.1	Thale cress	nucleus	60.19	63.85
CDY03934	Canola	nucleus	49.04	63.11
CDX90100	Canola	nucleus	56.69	62.24
CDY60278	Canola	nucleus	47.77	61.73
Bra010926.1-P	Field mustard	nucleus	55.73	61.19
CDY11775	Canola	nucleus	56.37	61.03
CDY46291	Canola	nucleus	27.07	60.71
Bra030057.1-P	Field mustard	nucleus	48.73	59.77
HORVU1Hr1G087660.2	Barley	nucleus	59.87	57.85
CDY21244	Canola	nucleus	29.62	56.71
HORVU5Hr1G103280.3	Barley	cytosol	23.25	13.2

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EMBL:AK357912	ncoils:Coil	UniProt:F2D205	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:HORVU5Hr1G073680	EnsemblPlants:HORVU5Hr1G073680.1	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF13	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00356	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI00020052D0
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D205]

Coordinates

chrchr5H:+:540583851..540585769

Molecular Weight (calculated)

36793.5 Da

IEP (calculated)

9.301

GRAVY (calculated)

-1.241

Length

314 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SVSPTLLLCN MYQRPDMITP GVDAQGNPIN PVKIQGDFED FYEDIFDELS KHGEVENLHV
101: CDNLADHLIG NVYVQFREED QAAKALQALQ GRFYSGRPII AEFSPVTDFR EATCRQFEEH NCNRGGYCNF MHVKQIGRDL RKRLYGHLHS SRRSHSRSSR
201: SPSPYRHHAR DRDRSSRSKD RGDYYGGSLD RGDYGDYYHH SRRSSERNRN YDSDGSRRRR HRSRTRSPVR EGSEERRAKI EQWNRERDAP ARQGSEERRA
301: KIEQWNRERE TAQA

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.