Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041639_P001 | Maize | cytosol | 48.65 | 83.72 |
| GSMUA_Achr11P... | Banana | cytosol | 57.77 | 83.01 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 75.0 | 81.62 |
| CDY60278 | Canola | nucleus | 66.55 | 81.07 |
| Bra030057.1-P | Field mustard | nucleus | 69.93 | 80.86 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 68.92 | 80.63 |
| CDY03934 | Canola | nucleus | 65.2 | 79.1 |
| AT5G42820.1 | Thale cress | nucleus | 75.0 | 78.45 |
| KRG89181 | Soybean | nucleus | 70.95 | 78.36 |
| Os01t0667800-01 | Rice | cytosol | 54.05 | 77.29 |
| KRH49506 | Soybean | nucleus | 70.27 | 76.75 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 67.91 | 72.04 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 67.57 | 71.68 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 65.54 | 71.32 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 67.57 | 71.17 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 67.57 | 71.17 |
| OQU87301 | Sorghum | nucleus | 68.58 | 70.49 |
| KXG35922 | Sorghum | nucleus | 66.89 | 69.23 |
| Zm00001d020954_P001 | Maize | nucleus | 66.89 | 68.99 |
| Os09t0491756-01 | Rice | nucleus | 65.2 | 66.55 |
| Zm00001d007784_P001 | Maize | plastid | 66.89 | 66.22 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 65.54 | 66.21 |
| Os05t0564200-01 | Rice | nucleus | 67.91 | 66.12 |
| EES18681 | Sorghum | nucleus | 68.24 | 65.8 |
| AT3G44785.1 | Thale cress | cytosol, nucleus, plastid | 16.55 | 65.33 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 67.57 | 65.15 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 66.89 | 65.13 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 64.19 | 60.9 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 64.19 | 60.32 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 63.85 | 60.19 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 65.54 | 59.69 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 65.54 | 59.33 |
| AT1G10320.1 | Thale cress | nucleus | 28.04 | 10.96 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EntrezGene:839657 | UniProt:A0A178W2Y4 | ProteinID:AAD46002.1 | ProteinID:AAF24943.1 |
| ProteinID:AEE30858.1 | EMBL:AF344324 | EMBL:AF409139 | ArrayExpress:AT1G27650 | EnsemblPlantsGene:AT1G27650 | RefSeq:AT1G27650 |
| TAIR:AT1G27650 | RefSeq:AT1G27650-TAIR-G | EnsemblPlants:AT1G27650.1 | TAIR:AT1G27650.1 | Symbol:ATU2AF35A | EMBL:AY065202 |
| EMBL:AY088540 | EMBL:AY090343 | EMBL:AY096507 | EMBL:AY122894 | GO:GO:0000003 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016607 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0048573 |
| GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | RefSeq:NP_174086.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAP12817.1 | PFAM:PF00076 | PFAM:PF00642 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0003011 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020001 | PO:PO:0020006 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF27 | UniProt:Q9S709 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI000009CC7A | InterPro:Znf_CCCH | SEG:seg |
Description
U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
Coordinates
chr1:+:9614551..9616574
Molecular Weight (calculated)
34574.2 Da
IEP (calculated)
9.707
GRAVY (calculated)
-1.230
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.