Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74383 | Canola | cytosol | 37.33 | 50.0 |
| CDY21243 | Canola | cytosol | 32.0 | 50.0 |
| HORVU5Hr1G073660.1 | Barley | cytosol | 61.33 | 24.34 |
| AT1G27650.1 | Thale cress | nucleus | 65.33 | 16.55 |
| AT5G42820.1 | Thale cress | nucleus | 61.33 | 16.25 |
| AT1G10320.1 | Thale cress | nucleus | 32.0 | 3.17 |
Protein Annotations
| EntrezGene:2745945 | MapMan:35.1 | ProteinID:AEE77953.1 | ArrayExpress:AT3G44785 | EnsemblPlantsGene:AT3G44785 | RefSeq:AT3G44785 |
| TAIR:AT3G44785 | RefSeq:AT3G44785-TAIR-G | EnsemblPlants:AT3G44785.1 | TAIR:AT3G44785.1 | Unigene:At.65241 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000571 | RefSeq:NP_974385.1 |
| PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF17 | UniProt:Q3EAP8 |
| InterPro:U2AF_small | UniParc:UPI000034F068 | InterPro:Znf_CCCH | : | : | : |
Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:UniProtKB/TrEMBL;Acc:Q3EAP8]
Coordinates
chr3:-:16328221..16328448
Molecular Weight (calculated)
8742.6 Da
IEP (calculated)
10.051
GRAVY (calculated)
-0.713
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MVEHLASIYG TEKDRVNCPF YFKIGVCRNG DRCSRLYTKP SISPTLLLSN TYQQGRLKQF LDPVQSREKD PKKKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.