Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21243 | Canola | cytosol | 15.87 | 62.5 |
| AT3G44785.1 | Thale cress | cytosol, nucleus, plastid | 24.34 | 61.33 |
| CDX74383 | Canola | cytosol | 17.46 | 58.93 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 69.31 | 41.72 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 57.67 | 38.79 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 58.73 | 34.15 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 26.98 | 9.22 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | UniProt:A0A287RSR1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| EnsemblPlantsGene:HORVU5Hr1G073660 | EnsemblPlants:HORVU5Hr1G073660.1 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 |
| PRINTS:PR01848 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF13 | InterPro:RBD_domain_sf | SMART:SM00356 |
| SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI000B485E00 | InterPro:Znf_CCCH | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:-:540522223..540523159
Molecular Weight (calculated)
20773.7 Da
IEP (calculated)
6.269
GRAVY (calculated)
-0.362
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SVSPTLLLCN MYQRPDMITP GVDAQGNPIN PVKIQGDFED FYEDIFDELS KHGEVENLHV
101: CDNLADHLIG NVYVQFRGGG PGCQGPPGAA GEVLLGPPHH CRVLAGHRLP GGHLPAVRGA QLQPWRILQL HACQTDWQGP EEEAVWAPA
101: CDNLADHLIG NVYVQFRGGG PGCQGPPGAA GEVLLGPPHH CRVLAGHRLP GGHLPAVRGA QLQPWRILQL HACQTDWQGP EEEAVWAPA
1: MVEHLASIYG TEKDRVNCPF YFKIGVCRNG DRCSRLYTKP SISPTLLLSN TYQQGRLKQF LDPVQSREKD PKKKF
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:UniProtKB/TrEMBL;Acc:Q3EAP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.