Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74383 | Canola | cytosol | 47.92 | 41.07 |
| AT3G44785.1 | Thale cress | cytosol, nucleus, plastid | 50.0 | 32.0 |
| CDY46291 | Canola | nucleus | 54.17 | 18.57 |
| HORVU5Hr1G073660.1 | Barley | cytosol | 62.5 | 15.87 |
| CDY60278 | Canola | nucleus | 62.5 | 12.35 |
| CDY03934 | Canola | nucleus | 62.5 | 12.3 |
| CDX95151 | Canola | nucleus | 64.58 | 11.03 |
| CDY52374 | Canola | nucleus | 64.58 | 10.84 |
| CDX90100 | Canola | nucleus | 60.42 | 10.14 |
| CDY11775 | Canola | nucleus | 60.42 | 10.0 |
| CDX93437 | Canola | nucleus | 29.17 | 3.21 |
| CDY20942 | Canola | nucleus | 29.17 | 1.86 |
| CDY21244 | Canola | nucleus | 4.17 | 1.22 |
Protein Annotations
| MapMan:35.2 | GO:A0A078G935 | UniProt:A0A078G935 | EnsemblPlants:CDY21243 | ProteinID:CDY21243 | ProteinID:CDY21243.1 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0089701 | EnsemblPlantsGene:GSBRNA2T00015528001 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF17 | InterPro:U2AF_small |
| UniParc:UPI0004EEB8A0 | : | : | : | : | : |
Description
BnaC02g28800DBnaC02g28800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G935]
Coordinates
chrLK032118:+:198420..198865
Molecular Weight (calculated)
5276.2 Da
IEP (calculated)
7.443
GRAVY (calculated)
-0.700
Length
48 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEHLASIFG TEKDRVNCPF YLKIGACRHE TGHDNTRCGP SGATTRPE
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.