Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60278 | Canola | nucleus | 86.07 | 86.42 |
| Bra030057.1-P | Field mustard | nucleus | 81.15 | 77.34 |
| CDY46291 | Canola | nucleus | 40.57 | 70.71 |
| CDY21244 | Canola | nucleus | 44.67 | 66.46 |
| AT1G27650.1 | Thale cress | nucleus | 79.1 | 65.2 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 70.08 | 62.87 |
| CDX74383 | Canola | cytosol | 14.34 | 62.5 |
| CDY21243 | Canola | cytosol | 12.3 | 62.5 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 64.34 | 62.06 |
| CDX95151 | Canola | nucleus | 70.9 | 61.57 |
| GSMUA_Achr11P... | Banana | cytosol | 51.23 | 60.68 |
| KRH49506 | Soybean | nucleus | 67.21 | 60.52 |
| CDY52374 | Canola | nucleus | 70.9 | 60.49 |
| KRG89181 | Soybean | nucleus | 65.98 | 60.07 |
| CDX90100 | Canola | nucleus | 69.67 | 59.44 |
| CDY11775 | Canola | nucleus | 70.08 | 58.97 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 65.16 | 56.99 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 63.52 | 56.99 |
| Zm00001d041639_P001 | Maize | cytosol | 40.16 | 56.98 |
| Zm00001d020954_P001 | Maize | nucleus | 65.98 | 56.1 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 64.34 | 55.87 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 63.52 | 55.56 |
| KXG35922 | Sorghum | nucleus | 64.75 | 55.24 |
| OQU87301 | Sorghum | nucleus | 65.16 | 55.21 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 63.52 | 55.16 |
| Os01t0667800-01 | Rice | cytosol | 46.72 | 55.07 |
| Os09t0491756-01 | Rice | nucleus | 63.11 | 53.1 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 63.52 | 52.9 |
| Zm00001d007784_P001 | Maize | plastid | 63.93 | 52.17 |
| Os05t0564200-01 | Rice | nucleus | 64.75 | 51.97 |
| EES18681 | Sorghum | nucleus | 64.34 | 51.14 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 63.52 | 50.99 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 63.93 | 50.81 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 63.11 | 49.36 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 63.11 | 49.04 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 63.11 | 48.89 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 63.52 | 47.69 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 63.52 | 47.4 |
| CDX93437 | Canola | nucleus | 19.67 | 11.01 |
| CDY20942 | Canola | nucleus | 25.41 | 8.22 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:A0A078ETJ6 | EnsemblPlants:CDY03934 | ProteinID:CDY03934 | ProteinID:CDY03934.1 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | EnsemblPlantsGene:GSBRNA2T00117437001 | InterPro:IPR000571 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 |
| InterPro:RBD_domain_sf | SMART:SM00356 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0004EF27E4 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g11590D
Coordinates
chrLK031947:+:883495..885061
Molecular Weight (calculated)
28292.9 Da
IEP (calculated)
10.700
GRAVY (calculated)
-1.344
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GFKEEDQAAA ALQALQGRFY SGRPIIADFS PVTDFREATC
101: RQYEENNCNR GGYCNFMHVK LVSRELRRKL FGRSRRSYRR GSGSRSRSRS ISPRHKREYD WRDPPHREFS HRDRDGEFYR HGSGKRSSER SEKGDRDGSR
201: RRHGSPPPRR GGSPGGGREG SEERRARIEQ WNREREEKEE GGGA
101: RQYEENNCNR GGYCNFMHVK LVSRELRRKL FGRSRRSYRR GSGSRSRSRS ISPRHKREYD WRDPPHREFS HRDRDGEFYR HGSGKRSSER SEKGDRDGSR
201: RRHGSPPPRR GGSPGGGREG SEERRARIEQ WNREREEKEE GGGA
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
Arabidopsis Description
U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.