Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
|
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0636900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | Os11t0636900-02 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G397300.1 | Wheat | nucleus | 82.24 | 91.91 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 84.87 | 88.05 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 89.47 | 83.69 |
| Zm00001d007784_P001 | Maize | plastid | 82.24 | 83.61 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 83.88 | 83.06 |
| GSMUA_Achr11P... | Banana | cytosol | 56.25 | 83.01 |
| EES18681 | Sorghum | nucleus | 83.55 | 82.74 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 88.82 | 82.57 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 81.91 | 81.91 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 67.76 | 81.42 |
| Os01t0667800-01 | Rice | cytosol | 54.28 | 79.71 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 69.08 | 77.21 |
| KRH49506 | Soybean | nucleus | 64.8 | 72.69 |
| AT5G42820.1 | Thale cress | nucleus | 67.11 | 72.08 |
| CDX95151 | Canola | nucleus | 66.12 | 71.53 |
| KRG89181 | Soybean | nucleus | 62.5 | 70.9 |
| CDY52374 | Canola | nucleus | 66.12 | 70.28 |
| Bra027459.1-P | Field mustard | nucleus | 66.45 | 69.42 |
| Os09t0491756-01 | Rice | nucleus | 64.8 | 67.93 |
| AT1G27650.1 | Thale cress | nucleus | 66.12 | 67.91 |
| CDY60278 | Canola | nucleus | 53.95 | 67.49 |
| Bra010926.1-P | Field mustard | nucleus | 62.83 | 66.78 |
| CDX90100 | Canola | nucleus | 61.84 | 65.73 |
| CDY11775 | Canola | nucleus | 62.5 | 65.52 |
| CDY03934 | Canola | nucleus | 51.97 | 64.75 |
| Bra030057.1-P | Field mustard | nucleus | 52.63 | 62.5 |
| CDY46291 | Canola | nucleus | 28.62 | 62.14 |
| CDY21244 | Canola | nucleus | 32.57 | 60.37 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 14.47 | 10.71 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EntrezGene:4339621 | ProteinID:AAT77399.1 | EMBL:AK070198 | EMBL:AK104767 |
| ProteinID:BAF18245.1 | ProteinID:BAS95352.1 | ProteinID:EAZ35286.1 | ProteinID:EEE64700.1 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os05g0564200 | EnsemblPlants:Os05t0564200-01 |
| PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF27 | UniProt:Q6AUG0 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00356 | SUPFAM:SSF54928 |
| InterPro:U2AF_small | UniParc:UPI00003FE69C | RefSeq:XP_015639721.1 | RefSeq:XP_015639722.1 | EMBL:Y18348 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38U2 snRNP auxiliary factor, small subunit. (Os05t0564200-01)
Coordinates
chr5:+:28080214..28082860
Molecular Weight (calculated)
34694.2 Da
IEP (calculated)
9.273
GRAVY (calculated)
-1.216
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TVSPTIVLAN MYQRPDMITP GVDAQGQPID PEKMQEHFED FYEDIYEELS KFGEVETLNV
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PRHRRGNRDR DDFRRERDGY RGGGDGYRGG GGGGGGDGYR GGDSYRGGGG GGRRGGGSRY DRYDDGGRRR HGSPPRRARS PVRESSEERR AKIEQWNRER
301: EEKP
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PRHRRGNRDR DDFRRERDGY RGGGDGYRGG GGGGGGDGYR GGDSYRGGGG GGRRGGGSRY DRYDDGGRRR HGSPPRRARS PVRESSEERR AKIEQWNRER
301: EEKP
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.