Factsheet for Os01t0667800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0636900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	Os11t0636900-02	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	70.05	70.39
GSMUA_Achr9P12340_001	Banana	cytosol	79.71	65.22
TraesCS3A01G246800.1	Wheat	nucleus	80.68	59.86
VIT_18s0122g00480.t01	Wine grape	nucleus	78.26	59.56
TraesCS3D01G244700.1	Wheat	nucleus	80.19	59.5
TraesCS3B01G272500.1	Wheat	nucleus	80.68	59.43
HORVU3Hr1G061060.2	Barley	nucleus	80.19	59.07
OQU87301	Sorghum	nucleus	82.13	59.03
KRG89181	Soybean	nucleus	74.88	57.84
KRH49506	Soybean	nucleus	74.88	57.2
CDX95151	Canola	nucleus	75.36	55.52
AT5G42820.1	Thale cress	nucleus	75.85	55.48
CDY52374	Canola	nucleus	75.36	54.55
Os05t0564200-01	Rice	nucleus	79.71	54.28
AT1G27650.1	Thale cress	nucleus	77.29	54.05
Bra027459.1-P	Field mustard	nucleus	75.36	53.61
CDX90100	Canola	nucleus	71.5	51.75
Os09t0491756-01	Rice	nucleus	72.46	51.72
CDY11775	Canola	nucleus	72.46	51.72
CDY46291	Canola	nucleus	34.78	51.43
Bra010926.1-P	Field mustard	nucleus	71.01	51.4
CDY60278	Canola	nucleus	55.07	46.91
CDY03934	Canola	nucleus	55.07	46.72
Bra030057.1-P	Field mustard	nucleus	55.07	44.53
CDY21244	Canola	nucleus	31.4	39.63
Os02t0557500-01	Rice	cytosol, nucleus	10.14	5.11

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ProteinID:BAF05725.2	ProteinID:BAS73596.1	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0667800	EnsemblPlants:Os01t0667800-01	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	UniProt:Q0JKK3	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:U2AF_small	UniParc:UPI0001B66277	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	:	:

Description

Similar to U2 snRNP auxiliary factor, small subunit. (Os01t0667800-01)

Coordinates

chr1:-:27317349..27320807

Molecular Weight (calculated)

23702.8 Da

IEP (calculated)

5.119

GRAVY (calculated)

-0.683

Length

207 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDKVNCPF YFKIGACRHG DRCSCLHNRP TISPTVVFAN MYQRPDMITP GVDAQGQPID PRQMQEHFED FYEDIFEELS KFGEIENLNV
101: CDNLADHMIG NVYVQFREED QAAAAHTALQ GRFYSGRPII VDFSPVTDFR EATCRQYEEN SCNRGGYCNF THVKQIGTWE GSEEKTLWPL QKATTRQEPQ
201: PKPKPTP

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.