CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08974
KXG28995
KXG29128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	EES08974	AT4G36690.1	21798944
AT5G42820.1	KXG28995	AT4G36690.1	21798944
AT5G42820.1	KXG29128	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G272500.1	Wheat	nucleus	86.11	88.26
GSMUA_Achr11P...	Banana	cytosol	59.38	83.01
TraesCS3D01G244700.1	Wheat	nucleus	80.21	82.8
HORVU3Hr1G061060.2	Barley	nucleus	80.21	82.21
Os01t0667800-01	Rice	cytosol	59.03	82.13
TraesCS3A01G246800.1	Wheat	nucleus	79.17	81.72
GSMUA_Achr9P12340_001	Banana	cytosol	70.83	80.63
VIT_18s0122g00480.t01	Wine grape	nucleus	76.04	80.51
EES18681	Sorghum	nucleus	81.25	76.22
KRH49506	Soybean	nucleus	70.49	74.91
KRG89181	Soybean	nucleus	67.71	72.76
AT5G42820.1	Thale cress	nucleus	70.49	71.73
CDX95151	Canola	nucleus	69.79	71.53
CDY52374	Canola	nucleus	70.14	70.63
Bra027459.1-P	Field mustard	nucleus	70.83	70.1
KXG35922	Sorghum	nucleus	69.1	69.58
AT1G27650.1	Thale cress	nucleus	70.49	68.58
CDY60278	Canola	nucleus	56.6	67.08
Bra010926.1-P	Field mustard	nucleus	65.28	65.73
CDX90100	Canola	nucleus	64.93	65.38
CDY03934	Canola	nucleus	55.21	65.16
CDY11775	Canola	nucleus	64.58	64.14
Bra030057.1-P	Field mustard	nucleus	55.56	62.5
CDY46291	Canola	nucleus	29.86	61.43
CDY21244	Canola	nucleus	34.03	59.76
OQU85120	Sorghum	nucleus, plastid	28.82	10.82

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EntrezGene:8080823	UniProt:C5XG09	ProteinID:EES03405.1	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU87301	ProteinID:OQU87301	ProteinID:OQU87301.1	ProteinID:OQU87302.1
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	EnsemblPlantsGene:SORBI_3003G250500	SUPFAM:SSF54928
InterPro:U2AF_small	UniParc:UPI0001A84A99	RefSeq:XP_002458285.1	InterPro:Znf_CCCH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:58889224..58892240

Molecular Weight (calculated)

33254.8 Da

IEP (calculated)

9.574

GRAVY (calculated)

-1.212

Length

288 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLVLVN MYQRPDMITP GVDAQGQPID PRKMQEHFED FYEDIYEELS KFGEIENLNV
101: CDNLADHMIG NVYVQFREED QAAAAHTALQ GRFYSGRPIV VDFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKKIGRDL RKKMFGHYKR PYRGRSRSPS
201: PHHRRERRDR DDYRGAGGGG GRGRDDYRGG GGGRRGGGSR HERYDDGGRR RHGGSPPPRR ARSPVRESSE ERRAKIEQWN RERDEKQG

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.