Factsheet for Bra010926.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90100	Canola	nucleus	87.06	87.06
Zm00001d041639_P001	Maize	cytosol	47.55	79.07
GSMUA_Achr11P...	Banana	cytosol	56.29	78.16
GSMUA_Achr9P12340_001	Banana	cytosol	68.53	77.47
VIT_18s0122g00480.t01	Wine grape	nucleus	71.33	75.0
KRG89181	Soybean	nucleus	67.13	71.64
Os01t0667800-01	Rice	cytosol	51.4	71.01
KRH49506	Soybean	nucleus	66.78	70.48
Bra027459.1-P	Field mustard	nucleus	71.68	70.45
TraesCS3D01G244700.1	Wheat	nucleus	66.78	68.46
TraesCS1A01G397300.1	Wheat	nucleus	65.03	68.38
TraesCS3A01G246800.1	Wheat	nucleus	66.43	68.1
HORVU3Hr1G061060.2	Barley	nucleus	66.78	67.97
TraesCS3B01G272500.1	Wheat	nucleus	66.78	67.97
Bra030057.1-P	Field mustard	nucleus	59.44	66.41
KXG35922	Sorghum	nucleus	65.73	65.73
Zm00001d020954_P001	Maize	nucleus	65.73	65.51
OQU87301	Sorghum	nucleus	65.73	65.28
Zm00001d007784_P001	Maize	plastid	67.13	64.21
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	68.18	63.52
TraesCS1D01G405300.3	Wheat	nucleus	65.03	63.48
EES18681	Sorghum	nucleus	67.83	63.19
Os05t0564200-01	Rice	nucleus	66.78	62.83
Zm00001d009570_P001	Maize	nucleus, plastid	66.78	62.83
Os09t0491756-01	Rice	nucleus	63.29	62.41
HORVU1Hr1G087660.2	Barley	nucleus	65.03	57.23
TraesCS1B01G425600.2	Wheat	nucleus	65.03	56.88
TraesCS5D01G275300.1	Wheat	nucleus	61.89	56.73
TraesCS5A01G267500.1	Wheat	nucleus	61.54	55.87
HORVU5Hr1G073680.1	Barley	nucleus	61.19	55.73
Bra019944.1-P	Field mustard	nucleus	22.38	12.5
Bra018446.1-P	Field mustard	nucleus	29.37	11.24

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra010926	EnsemblPlants:Bra010926.1	EnsemblPlants:Bra010926.1-P	GO:GO:0000003
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	GO:GO:0048573
GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:M4D373	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361
SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0002545A54	InterPro:Znf_CCCH	SEG:seg	:

Description

AT1G27650 (E=1e-089) ATU2AF35A | ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA08:-:17161632..17162492

Molecular Weight (calculated)

33326.0 Da

IEP (calculated)

9.199

GRAVY (calculated)

-1.222

Length

286 amino acids

Sequence
(BLAST)

001: MAEHLASIYG TEKDRVNCPF YNKMGACRHG DRCSRIHNRP AISPTLLLAN MYQRPDMIPP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALKALQ GRSYLGRPII GEFSPVTDFR EATCRQYEEE NCSRGGYCNF MHVKLVSREM RRKLFGRRSY RRGSRSRSIS
201: PRGRREYGRR GDRDRDPPRR EFSHRERDGE FYRHGSGKRS ERGGRDRDGS RRRERSPGGG REGSEERRAR IEQWNREREE KEEGGA

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.