Factsheet for TraesCS1B01G425600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G122400.1
TraesCS2B01G144600.1
TraesCS4A01G165000.4
TraesCS4A01G171800.3
TraesCS4B01G145600.4
TraesCS4D01G143400.3
TraesCS4D01G150000.4
TraesCS5A01G040700.1
TraesCS5A01G366000.1
TraesCS5B01G041900.1
TraesCS5B01G067400.1
TraesCS5B01G368400.1
TraesCS5D01G071600.1
TraesCS5D01G071700.1
TraesCS5D01G375600.1
TraesCSU01G068100.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	TraesCS2A01G122400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS2B01G144600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G165000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G171800.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4B01G145600.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G143400.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G150000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G040700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G366000.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G041900.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G067400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G368400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G375600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCSU01G068100.3	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G405300.3	Wheat	nucleus	89.6	100.0
TraesCS1A01G397300.1	Wheat	nucleus	83.18	100.0
HORVU1Hr1G087660.2	Barley	nucleus	98.47	99.08
Os05t0564200-01	Rice	nucleus	82.57	88.82
GSMUA_Achr9P12340_001	Banana	cytosol	62.08	80.24
GSMUA_Achr11P...	Banana	cytosol	50.46	80.1
Zm00001d007784_P001	Maize	plastid	73.09	79.93
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	74.31	79.15
EES18681	Sorghum	nucleus	74.01	78.83
Zm00001d009570_P001	Maize	nucleus, plastid	73.09	78.62
TraesCS3B01G272500.1	Wheat	nucleus	66.97	77.94
VIT_18s0122g00480.t01	Wine grape	nucleus	62.69	75.37
KRG89181	Soybean	nucleus	57.19	69.78
KRH49506	Soybean	nucleus	57.8	69.74
AT5G42820.1	Thale cress	nucleus	60.24	69.61
CDX95151	Canola	nucleus	59.33	69.04
CDY52374	Canola	nucleus	59.33	67.83
Bra027459.1-P	Field mustard	nucleus	59.63	67.01
CDY60278	Canola	nucleus	48.93	65.84
AT1G27650.1	Thale cress	nucleus	59.33	65.54
Bra010926.1-P	Field mustard	nucleus	56.88	65.03
CDX90100	Canola	nucleus	55.96	63.99
CDY03934	Canola	nucleus	47.4	63.52
CDY11775	Canola	nucleus	56.27	63.45
Bra030057.1-P	Field mustard	nucleus	47.71	60.94
CDY46291	Canola	nucleus	25.69	60.0
CDY21244	Canola	nucleus	29.36	58.54
TraesCS5B01G425300.2	Wheat	nucleus	24.77	10.77

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS1B01G425600
EnsemblPlants:TraesCS1B01G425600.2	InterPro:U2AF_small	InterPro:Znf_CCCH	TIGR:cd12539	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:651543487..651544470

Molecular Weight (calculated)

36287.0 Da

IEP (calculated)

9.366

GRAVY (calculated)

-1.183

Length

327 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TTSPTIVLAN MYQRPDMITP GVDAQGVAIA PEKMQEHFED FYEDIYEELS KFGEVETLNV
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PQHRRDNRDR GGDFRRDGRD EYRGGGGGGG GGYRGGDGGD GGGYRGGGGG GGYRGGDGGG YRGGGGGGYR GGGRGGGGGR HDRYDDGPRR RYGGSPPRRG
301: RSPPARENSE ERRAKIEQWN REREEKK

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.