Factsheet for Zm00001d039014_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, plastid

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007635_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	Zm00001d007635_P004	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007784_P001	Maize	plastid	96.74	99.33
EES18681	Sorghum	nucleus	98.37	98.37
Zm00001d009570_P001	Maize	nucleus, plastid	95.11	96.05
Zm00001d041639_P001	Maize	cytosol	53.09	94.77
TraesCS1A01G397300.1	Wheat	nucleus	75.57	85.29
GSMUA_Achr11P...	Banana	cytosol	56.68	84.47
Os05t0564200-01	Rice	nucleus	83.06	83.88
GSMUA_Achr9P12340_001	Banana	cytosol	68.08	82.61
TraesCS1D01G405300.3	Wheat	nucleus	77.2	80.89
VIT_18s0122g00480.t01	Wine grape	nucleus	70.36	79.41
HORVU1Hr1G087660.2	Barley	nucleus	79.48	75.08
TraesCS1B01G425600.2	Wheat	nucleus	79.15	74.31
KRH49506	Soybean	nucleus	64.5	73.06
KRG89181	Soybean	nucleus	62.87	72.01
AT5G42820.1	Thale cress	nucleus	66.12	71.73
Zm00001d020954_P001	Maize	nucleus	66.78	71.43
CDX95151	Canola	nucleus	65.15	71.17
CDY52374	Canola	nucleus	65.15	69.93
Bra027459.1-P	Field mustard	nucleus	65.47	69.07
Bra010926.1-P	Field mustard	nucleus	63.52	68.18
AT1G27650.1	Thale cress	nucleus	65.15	67.57
CDY60278	Canola	nucleus	52.77	66.67
CDX90100	Canola	nucleus	61.89	66.43
CDY11775	Canola	nucleus	62.22	65.86
CDY03934	Canola	nucleus	50.81	63.93
CDY46291	Canola	nucleus	28.99	63.57
Bra030057.1-P	Field mustard	nucleus	51.47	61.72
CDY21244	Canola	nucleus	31.6	59.15
Zm00001d016836_P002	Maize	nucleus	27.69	11.2

Protein Annotations

EntrezGene:100191858	MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ProteinID:AQK88524.1	UniProt:B4FAF4	EMBL:BT034092
EMBL:BT040747	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI00017B630F	EnsemblPlantsGene:Zm00001d039014
EnsemblPlants:Zm00001d039014_P001	EnsemblPlants:Zm00001d039014_T001	InterPro:Znf_CCCH	SEG:seg	:	:

Description

C3H-transcription factor 353Splicing factor U2af small subunit A

Coordinates

chr6:+:168713527..168714450

Molecular Weight (calculated)

35570.1 Da

IEP (calculated)

9.238

GRAVY (calculated)

-1.300

Length

307 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLVLAN MYQRPDMITP GVDAQGQPID PEKMQEHFED FYEDIYEELG KFGEIENLNV
101: CDNLADHMIG NVYVQFREEE QAAAAYNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGRDL RRKLYGRSAS RRYHGRSRSR
201: SPPPQRRGHR DRDDYHHRDR DDYRGGGGGG RGRGSRYDRY DDGAGRGGRH GRYDDGAGRG GRHDRYDDGG RRRHGSPSRR ARSPVRESSE ERRAKIEQWN
301: REREGKQ

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.