Factsheet for Zm00001d041639_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007635_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	Zm00001d007635_P004	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	73.84	61.65
GSMUA_Achr9P12340_001	Banana	cytosol	87.79	59.68
VIT_18s0122g00480.t01	Wine grape	nucleus	87.21	55.15
Zm00001d007784_P001	Maize	plastid	94.77	54.52
Zm00001d009570_P001	Maize	nucleus, plastid	94.77	53.62
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	94.77	53.09
KRG89181	Soybean	nucleus	81.98	52.61
KRH49506	Soybean	nucleus	81.98	52.03
Zm00001d020954_P001	Maize	nucleus	82.56	49.48
AT5G42820.1	Thale cress	nucleus	80.81	49.12
CDX95151	Canola	nucleus	80.23	49.11
AT1G27650.1	Thale cress	nucleus	83.72	48.65
CDY46291	Canola	nucleus	39.53	48.57
CDY52374	Canola	nucleus	80.23	48.25
CDX90100	Canola	nucleus	79.65	47.9
CDY11775	Canola	nucleus	80.23	47.59
Bra010926.1-P	Field mustard	nucleus	79.07	47.55
Bra027459.1-P	Field mustard	nucleus	80.23	47.42
CDY60278	Canola	nucleus	56.98	40.33
CDY03934	Canola	nucleus	56.98	40.16
Bra030057.1-P	Field mustard	nucleus	56.98	38.28
CDY21244	Canola	nucleus	26.74	28.05
Zm00001d016836_P002	Maize	nucleus	33.72	7.64

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	UniProt:A0A1D6MXH1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM33422.1	PFAM:PF00076
PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U2AF_small	UniParc:UPI000221D9E3
EnsemblPlantsGene:Zm00001d041639	EnsemblPlants:Zm00001d041639_P001	EnsemblPlants:Zm00001d041639_T001	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	:

Description

C3H-transcription factor 344Splicing factor U2af small subunit A

Coordinates

chr3:+:130914687..130915205

Molecular Weight (calculated)

19729.2 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.467

Length

172 amino acids

Sequence
(BLAST)

001: MAEYLASIFG TEKDRVNCPF YFKIGVCRHG DRCSRLHNRP TISPTLVLAN MYQRPDMITP GVDAQGQPID PEKMQEHFED FYEDIYEELG KFGEIENLNV
101: CDNLADHMIG NVYVQFREEE QAAVAYNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGSVIS CM

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.