Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85120 | Sorghum | nucleus, plastid | 59.55 | 58.93 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 40.98 | 56.24 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 54.68 | 54.97 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 53.49 | 54.42 |
| KRH13511 | Soybean | nucleus | 28.2 | 52.32 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 50.72 | 51.2 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 25.43 | 46.96 |
| KRH43656 | Soybean | nucleus | 29.64 | 37.56 |
| Bra018446.1-P | Field mustard | nucleus | 36.5 | 37.08 |
| CDY20942 | Canola | nucleus | 35.31 | 35.54 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 38.08 | 34.65 |
| AT1G10320.1 | Thale cress | nucleus | 34.39 | 34.48 |
| Zm00001d041639_P001 | Maize | cytosol | 7.64 | 33.72 |
| PGSC0003DMT400053361 | Potato | nucleus | 33.6 | 33.51 |
| Solyc01g103090.2.1 | Tomato | nucleus | 33.86 | 32.74 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 35.31 | 30.32 |
| Zm00001d020954_P001 | Maize | nucleus | 11.2 | 29.62 |
| Zm00001d007784_P001 | Maize | plastid | 11.07 | 28.09 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 11.2 | 27.69 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 11.07 | 27.63 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | UniProt:A0A1D6HAP5 | ProteinID:AQK71778.1 | ncoils:Coil | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0008442C77 | EnsemblPlantsGene:Zm00001d016836 | EnsemblPlants:Zm00001d016836_P002 |
| EnsemblPlants:Zm00001d016836_T002 | InterPro:Znf_CCCH | SEG:seg | : | : | : |
Description
rough endosperm3 rough endosperm3
Coordinates
chr5:-:177823355..177829656
Molecular Weight (calculated)
86431.8 Da
IEP (calculated)
8.970
GRAVY (calculated)
-1.288
Length
759 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALAAGGGA AADGAPEATA APTRREKRRE RKKERRRRAR RQAAARARAA VEAEAPAVDP EEERRLLEIQ EAEAAAESER ALRAFEDAER RWLEAAAARA
101: AEKAAAAAAE EDARAAEASA RNKPKDGQGN QSEEDSEWEY VEDGPAEIIW KGNEIIVKKK KVKVPKGSKE KLQIQEEDRP TSNPLPPQSV ALAAHRREPS
201: LSAQEVLDKV AQETPNFGTE QACSIDKAHC PFHLKTGACR FGLRCSRVHF YPDKSITLLM KNMYNGPGLA LEQDEGLEFT DEEIEQSYEE FYEDVHTEFL
301: KFGELVNFKV CRNGSFHLRG NVYVHYKSLD SALLAYSSMN GRYFAGKQIT CEFVAVTRWK AAICGEYMRS RYKTCSHGVA CNFIHCFRNP GGDYEWADWD
401: NHPPRYWIRK MVALFGPSVD EMNEKASHTP DFRSSVGSDR KKLKISSNRY VSRGSRNEDV HTRHSPQDYS HSKQERSSHN MNYEYRRHKR DSSAADKHRR
501: QDVGDTNDRQ FSTMGNDSKS HRHKHEERHR SDHGNGEKED DSKTRPRKHC SVRRGSLEVG YSDWSPDFTG TDNSKGPSGE KSTSRYDDAK GSRRGSSEYY
601: NLERHHSTAQ KQSRNEHSTT RRRRHDIEDY HDEKNDGRGE SRKHNRHESN DRWVATNSDV DSDVDRYQSS SCKGTRLGRK DDDPGIEVRH QRSGRSTKDD
701: KRRKHHSGNR WHSGTEEGTS DSSGGDLSSD SWSGRSRNSE NFSAHRSKRK RSRSKESGY
101: AEKAAAAAAE EDARAAEASA RNKPKDGQGN QSEEDSEWEY VEDGPAEIIW KGNEIIVKKK KVKVPKGSKE KLQIQEEDRP TSNPLPPQSV ALAAHRREPS
201: LSAQEVLDKV AQETPNFGTE QACSIDKAHC PFHLKTGACR FGLRCSRVHF YPDKSITLLM KNMYNGPGLA LEQDEGLEFT DEEIEQSYEE FYEDVHTEFL
301: KFGELVNFKV CRNGSFHLRG NVYVHYKSLD SALLAYSSMN GRYFAGKQIT CEFVAVTRWK AAICGEYMRS RYKTCSHGVA CNFIHCFRNP GGDYEWADWD
401: NHPPRYWIRK MVALFGPSVD EMNEKASHTP DFRSSVGSDR KKLKISSNRY VSRGSRNEDV HTRHSPQDYS HSKQERSSHN MNYEYRRHKR DSSAADKHRR
501: QDVGDTNDRQ FSTMGNDSKS HRHKHEERHR SDHGNGEKED DSKTRPRKHC SVRRGSLEVG YSDWSPDFTG TDNSKGPSGE KSTSRYDDAK GSRRGSSEYY
601: NLERHHSTAQ KQSRNEHSTT RRRRHDIEDY HDEKNDGRGE SRKHNRHESN DRWVATNSDV DSDVDRYQSS SCKGTRLGRK DDDPGIEVRH QRSGRSTKDD
701: KRRKHHSGNR WHSGTEEGTS DSSGGDLSSD SWSGRSRNSE NFSAHRSKRK RSRSKESGY
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.