Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20942 | Canola | nucleus | 56.8 | 57.03 |
| KRH13511 | Soybean | nucleus | 30.52 | 56.48 |
| Bra018446.1-P | Field mustard | nucleus | 52.31 | 53.01 |
| KRH43656 | Soybean | nucleus | 33.16 | 41.9 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 30.25 | 41.41 |
| PGSC0003DMT400053361 | Potato | nucleus | 37.91 | 37.71 |
| Solyc01g103090.2.1 | Tomato | nucleus | 38.18 | 36.82 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 38.71 | 35.13 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 34.35 | 34.85 |
| TraesCS5B01G425300.2 | Wheat | nucleus | 34.21 | 34.44 |
| Zm00001d016836_P002 | Maize | nucleus | 34.48 | 34.39 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 33.95 | 34.04 |
| OQU85120 | Sorghum | nucleus, plastid | 34.21 | 33.77 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 38.31 | 32.81 |
| AT3G44785.1 | Thale cress | cytosol, nucleus, plastid | 3.17 | 32.0 |
| AT1G27650.1 | Thale cress | nucleus | 10.96 | 28.04 |
| AT5G42820.1 | Thale cress | nucleus | 10.44 | 27.92 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 13.34 | 24.57 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | EntrezGene:837571 | ProteinID:AAD32882.1 | ProteinID:AEE28565.1 | EMBL:AK226684 |
| ArrayExpress:AT1G10320 | EnsemblPlantsGene:AT1G10320 | RefSeq:AT1G10320 | TAIR:AT1G10320 | RefSeq:AT1G10320-TAIR-G | EnsemblPlants:AT1G10320.1 |
| TAIR:AT1G10320.1 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030628 |
| GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | RefSeq:NP_172503.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF4 | UniProt:Q9SY74 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 |
| SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0000162D05 | InterPro:Znf_CCCH | SEG:seg |
Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
Coordinates
chr1:-:3384164..3388373
Molecular Weight (calculated)
89069.6 Da
IEP (calculated)
6.898
GRAVY (calculated)
-1.594
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
201: RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
301: ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
401: HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
501: RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
601: THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
701: SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
201: RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
301: ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
401: HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
501: RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
601: THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
701: SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.