Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95151 | Canola | nucleus | 93.64 | 94.31 |
| CDY52374 | Canola | nucleus | 93.64 | 92.66 |
| Bra027459.1-P | Field mustard | nucleus | 93.99 | 91.41 |
| CDY21244 | Canola | nucleus | 52.65 | 90.85 |
| GSMUA_Achr11P... | Banana | cytosol | 60.42 | 83.01 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 78.45 | 81.62 |
| Zm00001d041639_P001 | Maize | cytosol | 49.12 | 80.81 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 70.67 | 79.05 |
| KRH49506 | Soybean | nucleus | 73.85 | 77.12 |
| Os01t0667800-01 | Rice | cytosol | 55.48 | 75.85 |
| KRG89181 | Soybean | nucleus | 71.73 | 75.75 |
| AT1G27650.1 | Thale cress | nucleus | 78.45 | 75.0 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 69.61 | 72.43 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 70.67 | 71.68 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 70.32 | 70.82 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 69.61 | 70.61 |
| OQU87301 | Sorghum | nucleus | 71.73 | 70.49 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 69.61 | 70.11 |
| Zm00001d020954_P001 | Maize | nucleus | 70.67 | 69.69 |
| KXG35922 | Sorghum | nucleus | 69.61 | 68.88 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 69.61 | 67.24 |
| Zm00001d007784_P001 | Maize | plastid | 71.02 | 67.22 |
| Os05t0564200-01 | Rice | nucleus | 72.08 | 67.11 |
| EES18681 | Sorghum | nucleus | 72.08 | 66.45 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 71.73 | 66.12 |
| Os09t0491756-01 | Rice | nucleus | 67.49 | 65.86 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 70.67 | 65.79 |
| AT3G44785.1 | Thale cress | cytosol, nucleus, plastid | 16.25 | 61.33 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 69.61 | 60.62 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 66.78 | 60.58 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 67.14 | 60.51 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 69.61 | 60.24 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 66.78 | 60.0 |
| AT1G10320.1 | Thale cress | nucleus | 27.92 | 10.44 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EntrezGene:834293 | EntrezGene:839657 | UniProt:A0A178UM74 | ProteinID:AED94868.1 |
| ProteinID:AED94869.1 | EMBL:AF409140 | ArrayExpress:AT5G42820 | EnsemblPlantsGene:AT5G42820 | RefSeq:AT5G42820 | TAIR:AT5G42820 |
| RefSeq:AT5G42820-TAIR-G | EnsemblPlants:AT5G42820.1 | TAIR:AT5G42820.1 | Symbol:ATU2AF35B | EMBL:AY136436 | Unigene:At.25814 |
| ProteinID:BAB10638.1 | EMBL:BT000219 | GO:GO:0000003 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0016607 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0048573 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | RefSeq:NP_199096.1 | RefSeq:NP_974870.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAO95126.1 | PFAM:PF00076 | PFAM:PF00642 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020001 | PO:PO:0020006 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020127 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | UniProt:Q9FMY5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI00000AC10F | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
Coordinates
chr5:-:17170091..17172787
Molecular Weight (calculated)
33233.8 Da
IEP (calculated)
9.972
GRAVY (calculated)
-1.215
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.