Factsheet for TraesCS1D01G405300.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G122400.1
TraesCS2B01G144600.1
TraesCS4A01G165000.4
TraesCS4A01G171800.3
TraesCS4B01G145600.4
TraesCS4D01G143400.3
TraesCS4D01G150000.4
TraesCS5A01G040700.1
TraesCS5A01G366000.1
TraesCS5B01G041900.1
TraesCS5B01G067400.1
TraesCS5B01G368400.1
TraesCS5D01G071600.1
TraesCS5D01G071700.1
TraesCS5D01G375600.1
TraesCSU01G068100.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	TraesCS2A01G122400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS2B01G144600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G165000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G171800.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4B01G145600.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G143400.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G150000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G040700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G366000.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G041900.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G067400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G368400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G375600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCSU01G068100.3	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G397300.1	Wheat	nucleus	92.83	100.0
TraesCS1B01G425600.2	Wheat	nucleus	100.0	89.6
HORVU1Hr1G087660.2	Barley	nucleus	98.29	88.62
Os05t0564200-01	Rice	nucleus	88.05	84.87
GSMUA_Achr9P12340_001	Banana	cytosol	69.28	80.24
GSMUA_Achr11P...	Banana	cytosol	56.31	80.1
Zm00001d007784_P001	Maize	plastid	79.86	78.26
Zm00001d039014_P001	Maize	extracellular, plasma membrane, plastid	80.89	77.2
EES18681	Sorghum	nucleus	80.89	77.2
Zm00001d009570_P001	Maize	nucleus, plastid	79.86	76.97
VIT_18s0122g00480.t01	Wine grape	nucleus	69.97	75.37
TraesCS3D01G244700.1	Wheat	nucleus	69.28	72.76
KRG89181	Soybean	nucleus	63.82	69.78
KRH49506	Soybean	nucleus	64.51	69.74
AT5G42820.1	Thale cress	nucleus	67.24	69.61
CDX95151	Canola	nucleus	66.21	69.04
CDY52374	Canola	nucleus	66.21	67.83
Bra027459.1-P	Field mustard	nucleus	66.55	67.01
CDY60278	Canola	nucleus	54.61	65.84
AT1G27650.1	Thale cress	nucleus	66.21	65.54
Bra010926.1-P	Field mustard	nucleus	63.48	65.03
CDX90100	Canola	nucleus	62.46	63.99
CDY03934	Canola	nucleus	52.9	63.52
CDY11775	Canola	nucleus	62.8	63.45
Bra030057.1-P	Field mustard	nucleus	53.24	60.94
TraesCS5D01G275300.1	Wheat	nucleus	64.51	60.58
CDY46291	Canola	nucleus	28.67	60.0
CDY21244	Canola	nucleus	32.76	58.54
TraesCS5D01G431900.1	Wheat	nucleus	26.28	10.32
TraesCS5D01G432000.1	Wheat	cytosol	6.48	9.84

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS1D01G405300
EnsemblPlants:TraesCS1D01G405300.3	InterPro:U2AF_small	InterPro:Znf_CCCH	TIGR:cd12539	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:469833645..469834613

Molecular Weight (calculated)

33574.0 Da

IEP (calculated)

8.969

GRAVY (calculated)

-1.198

Length

293 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TTSPTIVLAN MYQRPDMITP GVDAQGVAIA PEKMQEHFED FYEDIYEELS KFGEVETLNV
101: CDNLADHMIG NVYVQFREEE QAVAAHNALQ GRFYSGRPII VEYSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKQIGREL RRKLYGGRSR RSHGRSRSPS
201: PQHRRDNRDR GGDFRRDGRD EYRGGGGGYR GGDGGDGGGY RGGGGRHDRY DDGPRRRYGG SPPRRGRSPP ARENSEERRA KIEQWNRERE EKK

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.