Factsheet for TraesCS4D01G143400.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	TraesCS1A01G314200.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1B01G326500.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1D01G314700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3A01G328100.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3B01G357600.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3D01G321700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS1A01G128600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1A01G176500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G146600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G203600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G124800.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G162500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G029030.3	Barley	nucleus	93.99	93.82
TraesCSU01G068100.3	Wheat	nucleus	95.63	90.52
TraesCS4A01G171800.3	Wheat	nucleus	94.72	89.5
PGSC0003DMT400040069	Potato	cytosol	45.17	79.74
CDY67096	Canola	mitochondrion	35.34	78.54
Zm00001d048655_P012	Maize	extracellular, nucleus	76.68	78.11
CDY12868	Canola	mitochondrion	32.42	78.07
EES08974	Sorghum	nucleus	77.05	77.61
CDX75589	Canola	mitochondrion	47.54	73.52
GSMUA_Achr4P16510_001	Banana	nucleus	62.48	72.67
Bra040973.1-P	Field mustard	nucleus	35.88	72.43
AT1G60830.2	Thale cress	nucleus	14.03	69.37
TraesCS4D01G150000.4	Wheat	nucleus	71.58	68.59
CDY55407	Canola	nucleus	13.66	66.96
VIT_04s0023g01450.t01	Wine grape	nucleus	67.4	65.49
CDY40492	Canola	nucleus	17.85	65.33
GSMUA_Achr4P11020_001	Banana	nucleus	68.12	64.93
Solyc02g085570.2.1	Tomato	nucleus	65.94	64.87
PGSC0003DMT400033041	Potato	nucleus	65.21	64.39
CDY12869	Canola	nucleus	57.92	64.11
CDY24773	Canola	nucleus	63.02	62.45
Bra010569.1-P	Field mustard	nucleus	63.02	62.45
CDY40481	Canola	nucleus	58.65	62.4
CDY35472	Canola	nucleus	62.11	62.0
Solyc02g062920.2.1	Tomato	nucleus	63.21	61.96
VIT_13s0139g00410.t01	Wine grape	cytosol	7.65	61.76
Bra027119.1-P	Field mustard	nucleus	55.19	61.71
AT1G60900.1	Thale cress	nucleus	64.85	60.44
AT4G36690.1	Thale cress	nucleus	62.84	60.21
CDY46188	Canola	nucleus	64.66	59.76
Bra031477.1-P	Field mustard	nucleus	64.66	59.76
KRH64800	Soybean	nucleus	65.03	59.5
CDY03767	Canola	nucleus	64.66	58.48
KRH56450	Soybean	nucleus	64.12	58.18
Bra040940.1-P	Field mustard	nucleus	59.38	58.01
PGSC0003DMT400000919	Potato	nucleus	63.39	57.52
CDY66742	Canola	nucleus	59.2	57.32
Solyc12g008750.1.1	Tomato	nucleus	62.84	56.84
TraesCS5D01G375600.1	Wheat	nucleus	62.3	55.97
CDY40493	Canola	nucleus	28.42	55.52
CDY30313	Canola	nucleus	58.83	54.93
CDY55589	Canola	mitochondrion	23.86	52.19
Bra010656.1-P	Field mustard	mitochondrion, plastid	23.68	51.38
Bra031341.1-P	Field mustard	nucleus	23.32	51.0
KXG29128	Sorghum	nucleus	55.37	48.03
VIT_13s0139g00390.t01	Wine grape	plasma membrane	10.38	36.54
TraesCS5D01G071700.1	Wheat	nucleus	10.93	34.88
TraesCS5D01G071600.1	Wheat	nucleus	10.75	31.55

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	EnsemblPlantsGene:TraesCS4D01G143400	EnsemblPlants:TraesCS4D01G143400.3	InterPro:U2AF_lg
TIGR:cd12230	TIGR:cd12231	TIGR:cd12232	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:130570300..130575480

Molecular Weight (calculated)

61313.6 Da

IEP (calculated)

8.128

GRAVY (calculated)

-0.888

Length

549 amino acids

Sequence
(BLAST)

001: MADDNGGGGD DYVSEAVRPE GDTHTREEGL SKSRDRDREK DKDKERHRDR DRDRGRDRDR GRDRDLDKDR DRDKDRDRHQ RHHRDKREHR DRPDDHDRHR
101: SRDSERRRDR ERDGYRRHRS RSRSRSRGRD DHRSRSHSKS SKRVSGFDLG PTAQSVLPQF PAIPTPSQLP GSSIPGMFPN MLPFAVGQFN PLVMQPQAMT
201: QQHIFPQATR HARRVYVGGL PPSANEQSVA IYFNQVMAAI GGNTAGPGDA VLNVYINHDK KFAFVEMRSV EEASNAMALD GILFEGAPVK VRRPTDYNPS
301: LAAALGPSQP SSNLNLAAVG LTPGSAGGLE GPDRIFVGGL PYYFTEAQVR ELLESFGPLR GFDLVKDRET GNSKGYAFCV YQDLNVTDIA CAALNGIKMG
401: DKTLTVRRAN QGSAQPRPEQ ENILLQAQQQ VQLQKLVYQV GALPTKVVCL TQVVTADELK DDEEYEDIME DMRLEAGKYG NLVKVVIPRP HPSGEPVSGV
501: GKVFLEYADV DGSTKAKTAM HGRKFGGNPV VAVFYPENKF ADEDYDAAA

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.